Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16393 | 3' | -54.5 | NC_004084.1 | + | 6224 | 0.68 | 0.640411 |
Target: 5'- -gGAgAACcCGUGUaggaCCUCACCGACg -3' miRNA: 3'- agCUgUUGaGCGCAga--GGAGUGGCUG- -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 11111 | 0.68 | 0.672079 |
Target: 5'- aUCGACGuCUCGUcggacgaGUCggUCCUCACagaGACg -3' miRNA: 3'- -AGCUGUuGAGCG-------CAG--AGGAGUGg--CUG- -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 19681 | 0.68 | 0.673167 |
Target: 5'- gUCGACGGCaUCGCGU----UCACCGAg -3' miRNA: 3'- -AGCUGUUG-AGCGCAgaggAGUGGCUg -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 27000 | 0.68 | 0.684023 |
Target: 5'- aUCG-CGGC-CGCGUCgucugcgaCUUCGCCGAUa -3' miRNA: 3'- -AGCuGUUGaGCGCAGa-------GGAGUGGCUG- -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 21521 | 0.68 | 0.651351 |
Target: 5'- uUCGAgGcGCUCGCGgacaUCCUCA-CGACu -3' miRNA: 3'- -AGCUgU-UGAGCGCag--AGGAGUgGCUG- -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 47637 | 0.68 | 0.662273 |
Target: 5'- cUCGA--ACg-GCGUCUCCUCcACUGGCc -3' miRNA: 3'- -AGCUguUGagCGCAGAGGAG-UGGCUG- -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 39560 | 0.68 | 0.662273 |
Target: 5'- aUCGAgGGCcUUGUugGcCUCCUCAUCGGCg -3' miRNA: 3'- -AGCUgUUG-AGCG--CaGAGGAGUGGCUG- -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 53187 | 0.67 | 0.747741 |
Target: 5'- cUCGGCGGCUC-CGUCgagugCCUC-CUGGa -3' miRNA: 3'- -AGCUGUUGAGcGCAGa----GGAGuGGCUg -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 30615 | 0.67 | 0.741517 |
Target: 5'- gUCGACGaacagcgucauucgcGCUCGCG-CagCUCGCgGACc -3' miRNA: 3'- -AGCUGU---------------UGAGCGCaGagGAGUGgCUG- -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 4390 | 0.67 | 0.737346 |
Target: 5'- cUCGACGACgccCGCGa----UCACCGGCg -3' miRNA: 3'- -AGCUGUUGa--GCGCagaggAGUGGCUG- -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 21801 | 0.67 | 0.704505 |
Target: 5'- gCGAUGACgUCGCGgaUCUCgUCgacggucGCCGACg -3' miRNA: 3'- aGCUGUUG-AGCGC--AGAGgAG-------UGGCUG- -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 12930 | 0.67 | 0.726846 |
Target: 5'- gCGACGAUgaCGaCGUCUUCgUgACCGACg -3' miRNA: 3'- aGCUGUUGa-GC-GCAGAGG-AgUGGCUG- -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 19957 | 0.67 | 0.726846 |
Target: 5'- cCGACAcgguCUCGCGa-UCCUCgaggccgcagggGCCGACc -3' miRNA: 3'- aGCUGUu---GAGCGCagAGGAG------------UGGCUG- -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 31685 | 0.67 | 0.705576 |
Target: 5'- aCGcCGAgaUCGgGUCUCCaaaUCGCCGAUa -3' miRNA: 3'- aGCuGUUg-AGCgCAGAGG---AGUGGCUG- -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 45486 | 0.67 | 0.726846 |
Target: 5'- uUCGGCGucgaUCaGCGUCUaCCUgGCCGGg -3' miRNA: 3'- -AGCUGUug--AG-CGCAGA-GGAgUGGCUg -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 48036 | 0.67 | 0.726846 |
Target: 5'- aCGACgAGCUCGaCGUCgaaCUCAuCCgGACg -3' miRNA: 3'- aGCUG-UUGAGC-GCAGag-GAGU-GG-CUG- -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 2866 | 0.67 | 0.716252 |
Target: 5'- uUCGGCGGgUC-CGUCUCaCcCAUCGGCg -3' miRNA: 3'- -AGCUGUUgAGcGCAGAG-GaGUGGCUG- -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 47535 | 0.66 | 0.788049 |
Target: 5'- gUCGACAucgaccauuccgGgUCGaaucggauCGUCUUgUCGCCGACg -3' miRNA: 3'- -AGCUGU------------UgAGC--------GCAGAGgAGUGGCUG- -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 18247 | 0.66 | 0.788049 |
Target: 5'- gUGACGuGCUCGa-UCUCCaucguccacUCGCCGGCg -3' miRNA: 3'- aGCUGU-UGAGCgcAGAGG---------AGUGGCUG- -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 12026 | 0.66 | 0.788049 |
Target: 5'- aCGuCAGCUCGauCGagUCCUCGCUGGu -3' miRNA: 3'- aGCuGUUGAGC--GCagAGGAGUGGCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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