miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16393 3' -54.5 NC_004084.1 + 10625 1.11 0.001026
Target:  5'- aUCGACAACUCGCGUCUCCUCACCGACa -3'
miRNA:   3'- -AGCUGUUGAGCGCAGAGGAGUGGCUG- -5'
16393 3' -54.5 NC_004084.1 + 22504 0.75 0.288298
Target:  5'- cUCGugAAC-CGCGUCaUCCUCGaCGACg -3'
miRNA:   3'- -AGCugUUGaGCGCAG-AGGAGUgGCUG- -5'
16393 3' -54.5 NC_004084.1 + 35146 0.74 0.334076
Target:  5'- gUCGGCcGCUCG-GUCUCCagACCGAa -3'
miRNA:   3'- -AGCUGuUGAGCgCAGAGGagUGGCUg -5'
16393 3' -54.5 NC_004084.1 + 36726 0.74 0.342204
Target:  5'- aUCGGCGGCaUCGaCGUCggggCCgUCACCGAUc -3'
miRNA:   3'- -AGCUGUUG-AGC-GCAGa---GG-AGUGGCUG- -5'
16393 3' -54.5 NC_004084.1 + 20037 0.73 0.412247
Target:  5'- aCGACGA-UCGCGUCUCgUCAgUCGAUg -3'
miRNA:   3'- aGCUGUUgAGCGCAGAGgAGU-GGCUG- -5'
16393 3' -54.5 NC_004084.1 + 17473 0.72 0.421607
Target:  5'- cUCGAUcACUCugccgGCGagaUCCUCACCGGCg -3'
miRNA:   3'- -AGCUGuUGAG-----CGCag-AGGAGUGGCUG- -5'
16393 3' -54.5 NC_004084.1 + 50799 0.71 0.494584
Target:  5'- gUCGugAACUCGCGgaaguaccccUCgaggacguccuucgCCUCGCUGGCg -3'
miRNA:   3'- -AGCugUUGAGCGC----------AGa-------------GGAGUGGCUG- -5'
16393 3' -54.5 NC_004084.1 + 37848 0.71 0.499728
Target:  5'- gUCGACGGC-CGauucgaacuggccCGUCUCCUCAuuCCGAUc -3'
miRNA:   3'- -AGCUGUUGaGC-------------GCAGAGGAGU--GGCUG- -5'
16393 3' -54.5 NC_004084.1 + 57818 0.7 0.542729
Target:  5'- aCGAuCAACUCGagggCgUCCUCACCGAa -3'
miRNA:   3'- aGCU-GUUGAGCgca-G-AGGAGUGGCUg -5'
16393 3' -54.5 NC_004084.1 + 54156 0.7 0.55341
Target:  5'- cUCGAggguCGGCUCGCccGUCUCCUCGUCGcGCg -3'
miRNA:   3'- -AGCU----GUUGAGCG--CAGAGGAGUGGC-UG- -5'
16393 3' -54.5 NC_004084.1 + 3813 0.7 0.564153
Target:  5'- aCGGCGAcCUCGauccaGUCUUCgucgaCGCCGACg -3'
miRNA:   3'- aGCUGUU-GAGCg----CAGAGGa----GUGGCUG- -5'
16393 3' -54.5 NC_004084.1 + 40304 0.7 0.564153
Target:  5'- aUGGcCAGCUucCGCGUCUCCUCGuCCaGCu -3'
miRNA:   3'- aGCU-GUUGA--GCGCAGAGGAGU-GGcUG- -5'
16393 3' -54.5 NC_004084.1 + 35381 0.69 0.595586
Target:  5'- cCGACGAacgucagcaggcuCUCGCG-CUgaCUUCGCCGACu -3'
miRNA:   3'- aGCUGUU-------------GAGCGCaGA--GGAGUGGCUG- -5'
16393 3' -54.5 NC_004084.1 + 9647 0.69 0.596676
Target:  5'- uUCGGCGACUC-CGguacCUCCUCguaGCCGuACu -3'
miRNA:   3'- -AGCUGUUGAGcGCa---GAGGAG---UGGC-UG- -5'
16393 3' -54.5 NC_004084.1 + 19094 0.69 0.607587
Target:  5'- uUCGA--GCUCgGCGUCgucgUCCUCACuCGAUg -3'
miRNA:   3'- -AGCUguUGAG-CGCAG----AGGAGUG-GCUG- -5'
16393 3' -54.5 NC_004084.1 + 1237 0.69 0.607587
Target:  5'- aUCGAgGGCgaUCGCGcccaUCUCCUCAUCcugGACg -3'
miRNA:   3'- -AGCUgUUG--AGCGC----AGAGGAGUGG---CUG- -5'
16393 3' -54.5 NC_004084.1 + 27263 0.69 0.607587
Target:  5'- cUCGACGAgauCUCGCGg-UCCgaacCGCUGACg -3'
miRNA:   3'- -AGCUGUU---GAGCGCagAGGa---GUGGCUG- -5'
16393 3' -54.5 NC_004084.1 + 21899 0.69 0.61852
Target:  5'- aUCGGCGuCUCG-GUCggccUCCUCAUCGAg -3'
miRNA:   3'- -AGCUGUuGAGCgCAG----AGGAGUGGCUg -5'
16393 3' -54.5 NC_004084.1 + 6224 0.68 0.640411
Target:  5'- -gGAgAACcCGUGUaggaCCUCACCGACg -3'
miRNA:   3'- agCUgUUGaGCGCAga--GGAGUGGCUG- -5'
16393 3' -54.5 NC_004084.1 + 21521 0.68 0.651351
Target:  5'- uUCGAgGcGCUCGCGgacaUCCUCA-CGACu -3'
miRNA:   3'- -AGCUgU-UGAGCGCag--AGGAGUgGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.