miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16393 3' -54.5 NC_004084.1 + 12930 0.67 0.726846
Target:  5'- gCGACGAUgaCGaCGUCUUCgUgACCGACg -3'
miRNA:   3'- aGCUGUUGa-GC-GCAGAGG-AgUGGCUG- -5'
16393 3' -54.5 NC_004084.1 + 19957 0.67 0.726846
Target:  5'- cCGACAcgguCUCGCGa-UCCUCgaggccgcagggGCCGACc -3'
miRNA:   3'- aGCUGUu---GAGCGCagAGGAG------------UGGCUG- -5'
16393 3' -54.5 NC_004084.1 + 2866 0.67 0.716252
Target:  5'- uUCGGCGGgUC-CGUCUCaCcCAUCGGCg -3'
miRNA:   3'- -AGCUGUUgAGcGCAGAG-GaGUGGCUG- -5'
16393 3' -54.5 NC_004084.1 + 31685 0.67 0.705576
Target:  5'- aCGcCGAgaUCGgGUCUCCaaaUCGCCGAUa -3'
miRNA:   3'- aGCuGUUg-AGCgCAGAGG---AGUGGCUG- -5'
16393 3' -54.5 NC_004084.1 + 21801 0.67 0.704505
Target:  5'- gCGAUGACgUCGCGgaUCUCgUCgacggucGCCGACg -3'
miRNA:   3'- aGCUGUUG-AGCGC--AGAGgAG-------UGGCUG- -5'
16393 3' -54.5 NC_004084.1 + 39794 0.68 0.69483
Target:  5'- gUCGACGGCgu-CGUCgCCgUCACUGGCg -3'
miRNA:   3'- -AGCUGUUGagcGCAGaGG-AGUGGCUG- -5'
16393 3' -54.5 NC_004084.1 + 27000 0.68 0.684023
Target:  5'- aUCG-CGGC-CGCGUCgucugcgaCUUCGCCGAUa -3'
miRNA:   3'- -AGCuGUUGaGCGCAGa-------GGAGUGGCUG- -5'
16393 3' -54.5 NC_004084.1 + 8002 0.68 0.673167
Target:  5'- gUCGGgAuC-CGCGUCUUCUucgCGCCGACu -3'
miRNA:   3'- -AGCUgUuGaGCGCAGAGGA---GUGGCUG- -5'
16393 3' -54.5 NC_004084.1 + 19681 0.68 0.673167
Target:  5'- gUCGACGGCaUCGCGU----UCACCGAg -3'
miRNA:   3'- -AGCUGUUG-AGCGCAgaggAGUGGCUg -5'
16393 3' -54.5 NC_004084.1 + 11111 0.68 0.672079
Target:  5'- aUCGACGuCUCGUcggacgaGUCggUCCUCACagaGACg -3'
miRNA:   3'- -AGCUGUuGAGCG-------CAG--AGGAGUGg--CUG- -5'
16393 3' -54.5 NC_004084.1 + 47637 0.68 0.662273
Target:  5'- cUCGA--ACg-GCGUCUCCUCcACUGGCc -3'
miRNA:   3'- -AGCUguUGagCGCAGAGGAG-UGGCUG- -5'
16393 3' -54.5 NC_004084.1 + 39560 0.68 0.662273
Target:  5'- aUCGAgGGCcUUGUugGcCUCCUCAUCGGCg -3'
miRNA:   3'- -AGCUgUUG-AGCG--CaGAGGAGUGGCUG- -5'
16393 3' -54.5 NC_004084.1 + 21521 0.68 0.651351
Target:  5'- uUCGAgGcGCUCGCGgacaUCCUCA-CGACu -3'
miRNA:   3'- -AGCUgU-UGAGCGCag--AGGAGUgGCUG- -5'
16393 3' -54.5 NC_004084.1 + 6224 0.68 0.640411
Target:  5'- -gGAgAACcCGUGUaggaCCUCACCGACg -3'
miRNA:   3'- agCUgUUGaGCGCAga--GGAGUGGCUG- -5'
16393 3' -54.5 NC_004084.1 + 21899 0.69 0.61852
Target:  5'- aUCGGCGuCUCG-GUCggccUCCUCAUCGAg -3'
miRNA:   3'- -AGCUGUuGAGCgCAG----AGGAGUGGCUg -5'
16393 3' -54.5 NC_004084.1 + 19094 0.69 0.607587
Target:  5'- uUCGA--GCUCgGCGUCgucgUCCUCACuCGAUg -3'
miRNA:   3'- -AGCUguUGAG-CGCAG----AGGAGUG-GCUG- -5'
16393 3' -54.5 NC_004084.1 + 1237 0.69 0.607587
Target:  5'- aUCGAgGGCgaUCGCGcccaUCUCCUCAUCcugGACg -3'
miRNA:   3'- -AGCUgUUG--AGCGC----AGAGGAGUGG---CUG- -5'
16393 3' -54.5 NC_004084.1 + 27263 0.69 0.607587
Target:  5'- cUCGACGAgauCUCGCGg-UCCgaacCGCUGACg -3'
miRNA:   3'- -AGCUGUU---GAGCGCagAGGa---GUGGCUG- -5'
16393 3' -54.5 NC_004084.1 + 9647 0.69 0.596676
Target:  5'- uUCGGCGACUC-CGguacCUCCUCguaGCCGuACu -3'
miRNA:   3'- -AGCUGUUGAGcGCa---GAGGAG---UGGC-UG- -5'
16393 3' -54.5 NC_004084.1 + 35381 0.69 0.595586
Target:  5'- cCGACGAacgucagcaggcuCUCGCG-CUgaCUUCGCCGACu -3'
miRNA:   3'- aGCUGUU-------------GAGCGCaGA--GGAGUGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.