miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16393 3' -54.5 NC_004084.1 + 1237 0.69 0.607587
Target:  5'- aUCGAgGGCgaUCGCGcccaUCUCCUCAUCcugGACg -3'
miRNA:   3'- -AGCUgUUG--AGCGC----AGAGGAGUGG---CUG- -5'
16393 3' -54.5 NC_004084.1 + 2866 0.67 0.716252
Target:  5'- uUCGGCGGgUC-CGUCUCaCcCAUCGGCg -3'
miRNA:   3'- -AGCUGUUgAGcGCAGAG-GaGUGGCUG- -5'
16393 3' -54.5 NC_004084.1 + 3813 0.7 0.564153
Target:  5'- aCGGCGAcCUCGauccaGUCUUCgucgaCGCCGACg -3'
miRNA:   3'- aGCUGUU-GAGCg----CAGAGGa----GUGGCUG- -5'
16393 3' -54.5 NC_004084.1 + 4390 0.67 0.737346
Target:  5'- cUCGACGACgccCGCGa----UCACCGGCg -3'
miRNA:   3'- -AGCUGUUGa--GCGCagaggAGUGGCUG- -5'
16393 3' -54.5 NC_004084.1 + 6224 0.68 0.640411
Target:  5'- -gGAgAACcCGUGUaggaCCUCACCGACg -3'
miRNA:   3'- agCUgUUGaGCGCAga--GGAGUGGCUG- -5'
16393 3' -54.5 NC_004084.1 + 7571 0.66 0.807284
Target:  5'- gUCGGcCGACUUGCucGUCUCgccUUCGCCGuCg -3'
miRNA:   3'- -AGCU-GUUGAGCG--CAGAG---GAGUGGCuG- -5'
16393 3' -54.5 NC_004084.1 + 8002 0.68 0.673167
Target:  5'- gUCGGgAuC-CGCGUCUUCUucgCGCCGACu -3'
miRNA:   3'- -AGCUgUuGaGCGCAGAGGA---GUGGCUG- -5'
16393 3' -54.5 NC_004084.1 + 9647 0.69 0.596676
Target:  5'- uUCGGCGACUC-CGguacCUCCUCguaGCCGuACu -3'
miRNA:   3'- -AGCUGUUGAGcGCa---GAGGAG---UGGC-UG- -5'
16393 3' -54.5 NC_004084.1 + 10625 1.11 0.001026
Target:  5'- aUCGACAACUCGCGUCUCCUCACCGACa -3'
miRNA:   3'- -AGCUGUUGAGCGCAGAGGAGUGGCUG- -5'
16393 3' -54.5 NC_004084.1 + 11111 0.68 0.672079
Target:  5'- aUCGACGuCUCGUcggacgaGUCggUCCUCACagaGACg -3'
miRNA:   3'- -AGCUGUuGAGCG-------CAG--AGGAGUGg--CUG- -5'
16393 3' -54.5 NC_004084.1 + 12026 0.66 0.788049
Target:  5'- aCGuCAGCUCGauCGagUCCUCGCUGGu -3'
miRNA:   3'- aGCuGUUGAGC--GCagAGGAGUGGCUg -5'
16393 3' -54.5 NC_004084.1 + 12930 0.67 0.726846
Target:  5'- gCGACGAUgaCGaCGUCUUCgUgACCGACg -3'
miRNA:   3'- aGCUGUUGa-GC-GCAGAGG-AgUGGCUG- -5'
16393 3' -54.5 NC_004084.1 + 17473 0.72 0.421607
Target:  5'- cUCGAUcACUCugccgGCGagaUCCUCACCGGCg -3'
miRNA:   3'- -AGCUGuUGAG-----CGCag-AGGAGUGGCUG- -5'
16393 3' -54.5 NC_004084.1 + 18247 0.66 0.788049
Target:  5'- gUGACGuGCUCGa-UCUCCaucguccacUCGCCGGCg -3'
miRNA:   3'- aGCUGU-UGAGCgcAGAGG---------AGUGGCUG- -5'
16393 3' -54.5 NC_004084.1 + 19094 0.69 0.607587
Target:  5'- uUCGA--GCUCgGCGUCgucgUCCUCACuCGAUg -3'
miRNA:   3'- -AGCUguUGAG-CGCAG----AGGAGUG-GCUG- -5'
16393 3' -54.5 NC_004084.1 + 19681 0.68 0.673167
Target:  5'- gUCGACGGCaUCGCGU----UCACCGAg -3'
miRNA:   3'- -AGCUGUUG-AGCGCAgaggAGUGGCUg -5'
16393 3' -54.5 NC_004084.1 + 19957 0.67 0.726846
Target:  5'- cCGACAcgguCUCGCGa-UCCUCgaggccgcagggGCCGACc -3'
miRNA:   3'- aGCUGUu---GAGCGCagAGGAG------------UGGCUG- -5'
16393 3' -54.5 NC_004084.1 + 20037 0.73 0.412247
Target:  5'- aCGACGA-UCGCGUCUCgUCAgUCGAUg -3'
miRNA:   3'- aGCUGUUgAGCGCAGAGgAGU-GGCUG- -5'
16393 3' -54.5 NC_004084.1 + 20763 0.66 0.797753
Target:  5'- cCGGCgggaAugUUG-GUCUCUUCGCCGAg -3'
miRNA:   3'- aGCUG----UugAGCgCAGAGGAGUGGCUg -5'
16393 3' -54.5 NC_004084.1 + 21521 0.68 0.651351
Target:  5'- uUCGAgGcGCUCGCGgacaUCCUCA-CGACu -3'
miRNA:   3'- -AGCUgU-UGAGCGCag--AGGAGUgGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.