miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16393 3' -54.5 NC_004084.1 + 21801 0.67 0.704505
Target:  5'- gCGAUGACgUCGCGgaUCUCgUCgacggucGCCGACg -3'
miRNA:   3'- aGCUGUUG-AGCGC--AGAGgAG-------UGGCUG- -5'
16393 3' -54.5 NC_004084.1 + 21899 0.69 0.61852
Target:  5'- aUCGGCGuCUCG-GUCggccUCCUCAUCGAg -3'
miRNA:   3'- -AGCUGUuGAGCgCAG----AGGAGUGGCUg -5'
16393 3' -54.5 NC_004084.1 + 22504 0.75 0.288298
Target:  5'- cUCGugAAC-CGCGUCaUCCUCGaCGACg -3'
miRNA:   3'- -AGCugUUGaGCGCAG-AGGAGUgGCUG- -5'
16393 3' -54.5 NC_004084.1 + 27000 0.68 0.684023
Target:  5'- aUCG-CGGC-CGCGUCgucugcgaCUUCGCCGAUa -3'
miRNA:   3'- -AGCuGUUGaGCGCAGa-------GGAGUGGCUG- -5'
16393 3' -54.5 NC_004084.1 + 27263 0.69 0.607587
Target:  5'- cUCGACGAgauCUCGCGg-UCCgaacCGCUGACg -3'
miRNA:   3'- -AGCUGUU---GAGCGCagAGGa---GUGGCUG- -5'
16393 3' -54.5 NC_004084.1 + 28120 0.66 0.806339
Target:  5'- cUCGACGAg-CGCGUCaaugacgUCCUCGucUCGAUa -3'
miRNA:   3'- -AGCUGUUgaGCGCAG-------AGGAGU--GGCUG- -5'
16393 3' -54.5 NC_004084.1 + 30615 0.67 0.741517
Target:  5'- gUCGACGaacagcgucauucgcGCUCGCG-CagCUCGCgGACc -3'
miRNA:   3'- -AGCUGU---------------UGAGCGCaGagGAGUGgCUG- -5'
16393 3' -54.5 NC_004084.1 + 30892 0.66 0.797753
Target:  5'- cUCGACAACggCGCGaUCUCC---CCGGa -3'
miRNA:   3'- -AGCUGUUGa-GCGC-AGAGGaguGGCUg -5'
16393 3' -54.5 NC_004084.1 + 31685 0.67 0.705576
Target:  5'- aCGcCGAgaUCGgGUCUCCaaaUCGCCGAUa -3'
miRNA:   3'- aGCuGUUg-AGCgCAGAGG---AGUGGCUG- -5'
16393 3' -54.5 NC_004084.1 + 32427 0.66 0.778185
Target:  5'- aUCGcGCGgauGCUCGUG-CUCUUCGCCuGCg -3'
miRNA:   3'- -AGC-UGU---UGAGCGCaGAGGAGUGGcUG- -5'
16393 3' -54.5 NC_004084.1 + 35146 0.74 0.334076
Target:  5'- gUCGGCcGCUCG-GUCUCCagACCGAa -3'
miRNA:   3'- -AGCUGuUGAGCgCAGAGGagUGGCUg -5'
16393 3' -54.5 NC_004084.1 + 35381 0.69 0.595586
Target:  5'- cCGACGAacgucagcaggcuCUCGCG-CUgaCUUCGCCGACu -3'
miRNA:   3'- aGCUGUU-------------GAGCGCaGA--GGAGUGGCUG- -5'
16393 3' -54.5 NC_004084.1 + 36726 0.74 0.342204
Target:  5'- aUCGGCGGCaUCGaCGUCggggCCgUCACCGAUc -3'
miRNA:   3'- -AGCUGUUG-AGC-GCAGa---GG-AGUGGCUG- -5'
16393 3' -54.5 NC_004084.1 + 37848 0.71 0.499728
Target:  5'- gUCGACGGC-CGauucgaacuggccCGUCUCCUCAuuCCGAUc -3'
miRNA:   3'- -AGCUGUUGaGC-------------GCAGAGGAGU--GGCUG- -5'
16393 3' -54.5 NC_004084.1 + 39560 0.68 0.662273
Target:  5'- aUCGAgGGCcUUGUugGcCUCCUCAUCGGCg -3'
miRNA:   3'- -AGCUgUUG-AGCG--CaGAGGAGUGGCUG- -5'
16393 3' -54.5 NC_004084.1 + 39649 0.66 0.78707
Target:  5'- gCGACGccgaggaACUCGCGcgCUCCaaccCCGACu -3'
miRNA:   3'- aGCUGU-------UGAGCGCa-GAGGagu-GGCUG- -5'
16393 3' -54.5 NC_004084.1 + 39794 0.68 0.69483
Target:  5'- gUCGACGGCgu-CGUCgCCgUCACUGGCg -3'
miRNA:   3'- -AGCUGUUGagcGCAGaGG-AGUGGCUG- -5'
16393 3' -54.5 NC_004084.1 + 40304 0.7 0.564153
Target:  5'- aUGGcCAGCUucCGCGUCUCCUCGuCCaGCu -3'
miRNA:   3'- aGCU-GUUGA--GCGCAGAGGAGU-GGcUG- -5'
16393 3' -54.5 NC_004084.1 + 43075 0.66 0.778185
Target:  5'- cUCGA----UCGCGUCgaguUCCUCAUCGAg -3'
miRNA:   3'- -AGCUguugAGCGCAG----AGGAGUGGCUg -5'
16393 3' -54.5 NC_004084.1 + 45486 0.67 0.726846
Target:  5'- uUCGGCGucgaUCaGCGUCUaCCUgGCCGGg -3'
miRNA:   3'- -AGCUGUug--AG-CGCAGA-GGAgUGGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.