miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16393 3' -54.5 NC_004084.1 + 57869 0.66 0.797753
Target:  5'- cUGGCGAUcucgUCGUGgagCUCCUCGaCGGCg -3'
miRNA:   3'- aGCUGUUG----AGCGCa--GAGGAGUgGCUG- -5'
16393 3' -54.5 NC_004084.1 + 57818 0.7 0.542729
Target:  5'- aCGAuCAACUCGagggCgUCCUCACCGAa -3'
miRNA:   3'- aGCU-GUUGAGCgca-G-AGGAGUGGCUg -5'
16393 3' -54.5 NC_004084.1 + 57336 0.66 0.768172
Target:  5'- -aGACcACcuUCGCGUCa--UCGCCGACg -3'
miRNA:   3'- agCUGuUG--AGCGCAGaggAGUGGCUG- -5'
16393 3' -54.5 NC_004084.1 + 54156 0.7 0.55341
Target:  5'- cUCGAggguCGGCUCGCccGUCUCCUCGUCGcGCg -3'
miRNA:   3'- -AGCU----GUUGAGCG--CAGAGGAGUGGC-UG- -5'
16393 3' -54.5 NC_004084.1 + 53187 0.67 0.747741
Target:  5'- cUCGGCGGCUC-CGUCgagugCCUC-CUGGa -3'
miRNA:   3'- -AGCUGUUGAGcGCAGa----GGAGuGGCUg -5'
16393 3' -54.5 NC_004084.1 + 50938 0.66 0.75802
Target:  5'- gUCGACGAC-CcUGaUCUCCUCcUCGACg -3'
miRNA:   3'- -AGCUGUUGaGcGC-AGAGGAGuGGCUG- -5'
16393 3' -54.5 NC_004084.1 + 50799 0.71 0.494584
Target:  5'- gUCGugAACUCGCGgaaguaccccUCgaggacguccuucgCCUCGCUGGCg -3'
miRNA:   3'- -AGCugUUGAGCGC----------AGa-------------GGAGUGGCUG- -5'
16393 3' -54.5 NC_004084.1 + 48997 0.66 0.788049
Target:  5'- cCGAgAGCgCGUG-CUCgUCAUCGGCa -3'
miRNA:   3'- aGCUgUUGaGCGCaGAGgAGUGGCUG- -5'
16393 3' -54.5 NC_004084.1 + 48113 0.66 0.807284
Target:  5'- uUCGACGucgaGCUCGuCGUCgUCCaggUCGUCGACc -3'
miRNA:   3'- -AGCUGU----UGAGC-GCAG-AGG---AGUGGCUG- -5'
16393 3' -54.5 NC_004084.1 + 48036 0.67 0.726846
Target:  5'- aCGACgAGCUCGaCGUCgaaCUCAuCCgGACg -3'
miRNA:   3'- aGCUG-UUGAGC-GCAGag-GAGU-GG-CUG- -5'
16393 3' -54.5 NC_004084.1 + 47637 0.68 0.662273
Target:  5'- cUCGA--ACg-GCGUCUCCUCcACUGGCc -3'
miRNA:   3'- -AGCUguUGagCGCAGAGGAG-UGGCUG- -5'
16393 3' -54.5 NC_004084.1 + 47535 0.66 0.788049
Target:  5'- gUCGACAucgaccauuccgGgUCGaaucggauCGUCUUgUCGCCGACg -3'
miRNA:   3'- -AGCUGU------------UgAGC--------GCAGAGgAGUGGCUG- -5'
16393 3' -54.5 NC_004084.1 + 45486 0.67 0.726846
Target:  5'- uUCGGCGucgaUCaGCGUCUaCCUgGCCGGg -3'
miRNA:   3'- -AGCUGUug--AG-CGCAGA-GGAgUGGCUg -5'
16393 3' -54.5 NC_004084.1 + 43075 0.66 0.778185
Target:  5'- cUCGA----UCGCGUCgaguUCCUCAUCGAg -3'
miRNA:   3'- -AGCUguugAGCGCAG----AGGAGUGGCUg -5'
16393 3' -54.5 NC_004084.1 + 40304 0.7 0.564153
Target:  5'- aUGGcCAGCUucCGCGUCUCCUCGuCCaGCu -3'
miRNA:   3'- aGCU-GUUGA--GCGCAGAGGAGU-GGcUG- -5'
16393 3' -54.5 NC_004084.1 + 39794 0.68 0.69483
Target:  5'- gUCGACGGCgu-CGUCgCCgUCACUGGCg -3'
miRNA:   3'- -AGCUGUUGagcGCAGaGG-AGUGGCUG- -5'
16393 3' -54.5 NC_004084.1 + 39649 0.66 0.78707
Target:  5'- gCGACGccgaggaACUCGCGcgCUCCaaccCCGACu -3'
miRNA:   3'- aGCUGU-------UGAGCGCa-GAGGagu-GGCUG- -5'
16393 3' -54.5 NC_004084.1 + 39560 0.68 0.662273
Target:  5'- aUCGAgGGCcUUGUugGcCUCCUCAUCGGCg -3'
miRNA:   3'- -AGCUgUUG-AGCG--CaGAGGAGUGGCUG- -5'
16393 3' -54.5 NC_004084.1 + 37848 0.71 0.499728
Target:  5'- gUCGACGGC-CGauucgaacuggccCGUCUCCUCAuuCCGAUc -3'
miRNA:   3'- -AGCUGUUGaGC-------------GCAGAGGAGU--GGCUG- -5'
16393 3' -54.5 NC_004084.1 + 36726 0.74 0.342204
Target:  5'- aUCGGCGGCaUCGaCGUCggggCCgUCACCGAUc -3'
miRNA:   3'- -AGCUGUUG-AGC-GCAGa---GG-AGUGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.