Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16393 | 3' | -54.5 | NC_004084.1 | + | 35381 | 0.69 | 0.595586 |
Target: 5'- cCGACGAacgucagcaggcuCUCGCG-CUgaCUUCGCCGACu -3' miRNA: 3'- aGCUGUU-------------GAGCGCaGA--GGAGUGGCUG- -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 35146 | 0.74 | 0.334076 |
Target: 5'- gUCGGCcGCUCG-GUCUCCagACCGAa -3' miRNA: 3'- -AGCUGuUGAGCgCAGAGGagUGGCUg -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 32427 | 0.66 | 0.778185 |
Target: 5'- aUCGcGCGgauGCUCGUG-CUCUUCGCCuGCg -3' miRNA: 3'- -AGC-UGU---UGAGCGCaGAGGAGUGGcUG- -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 31685 | 0.67 | 0.705576 |
Target: 5'- aCGcCGAgaUCGgGUCUCCaaaUCGCCGAUa -3' miRNA: 3'- aGCuGUUg-AGCgCAGAGG---AGUGGCUG- -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 30892 | 0.66 | 0.797753 |
Target: 5'- cUCGACAACggCGCGaUCUCC---CCGGa -3' miRNA: 3'- -AGCUGUUGa-GCGC-AGAGGaguGGCUg -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 30615 | 0.67 | 0.741517 |
Target: 5'- gUCGACGaacagcgucauucgcGCUCGCG-CagCUCGCgGACc -3' miRNA: 3'- -AGCUGU---------------UGAGCGCaGagGAGUGgCUG- -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 28120 | 0.66 | 0.806339 |
Target: 5'- cUCGACGAg-CGCGUCaaugacgUCCUCGucUCGAUa -3' miRNA: 3'- -AGCUGUUgaGCGCAG-------AGGAGU--GGCUG- -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 27263 | 0.69 | 0.607587 |
Target: 5'- cUCGACGAgauCUCGCGg-UCCgaacCGCUGACg -3' miRNA: 3'- -AGCUGUU---GAGCGCagAGGa---GUGGCUG- -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 27000 | 0.68 | 0.684023 |
Target: 5'- aUCG-CGGC-CGCGUCgucugcgaCUUCGCCGAUa -3' miRNA: 3'- -AGCuGUUGaGCGCAGa-------GGAGUGGCUG- -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 22504 | 0.75 | 0.288298 |
Target: 5'- cUCGugAAC-CGCGUCaUCCUCGaCGACg -3' miRNA: 3'- -AGCugUUGaGCGCAG-AGGAGUgGCUG- -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 21899 | 0.69 | 0.61852 |
Target: 5'- aUCGGCGuCUCG-GUCggccUCCUCAUCGAg -3' miRNA: 3'- -AGCUGUuGAGCgCAG----AGGAGUGGCUg -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 21801 | 0.67 | 0.704505 |
Target: 5'- gCGAUGACgUCGCGgaUCUCgUCgacggucGCCGACg -3' miRNA: 3'- aGCUGUUG-AGCGC--AGAGgAG-------UGGCUG- -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 21521 | 0.68 | 0.651351 |
Target: 5'- uUCGAgGcGCUCGCGgacaUCCUCA-CGACu -3' miRNA: 3'- -AGCUgU-UGAGCGCag--AGGAGUgGCUG- -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 20763 | 0.66 | 0.797753 |
Target: 5'- cCGGCgggaAugUUG-GUCUCUUCGCCGAg -3' miRNA: 3'- aGCUG----UugAGCgCAGAGGAGUGGCUg -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 20037 | 0.73 | 0.412247 |
Target: 5'- aCGACGA-UCGCGUCUCgUCAgUCGAUg -3' miRNA: 3'- aGCUGUUgAGCGCAGAGgAGU-GGCUG- -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 19957 | 0.67 | 0.726846 |
Target: 5'- cCGACAcgguCUCGCGa-UCCUCgaggccgcagggGCCGACc -3' miRNA: 3'- aGCUGUu---GAGCGCagAGGAG------------UGGCUG- -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 19681 | 0.68 | 0.673167 |
Target: 5'- gUCGACGGCaUCGCGU----UCACCGAg -3' miRNA: 3'- -AGCUGUUG-AGCGCAgaggAGUGGCUg -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 19094 | 0.69 | 0.607587 |
Target: 5'- uUCGA--GCUCgGCGUCgucgUCCUCACuCGAUg -3' miRNA: 3'- -AGCUguUGAG-CGCAG----AGGAGUG-GCUG- -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 18247 | 0.66 | 0.788049 |
Target: 5'- gUGACGuGCUCGa-UCUCCaucguccacUCGCCGGCg -3' miRNA: 3'- aGCUGU-UGAGCgcAGAGG---------AGUGGCUG- -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 17473 | 0.72 | 0.421607 |
Target: 5'- cUCGAUcACUCugccgGCGagaUCCUCACCGGCg -3' miRNA: 3'- -AGCUGuUGAG-----CGCag-AGGAGUGGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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