Results 1 - 20 of 52 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16393 | 3' | -54.5 | NC_004084.1 | + | 48113 | 0.66 | 0.807284 |
Target: 5'- uUCGACGucgaGCUCGuCGUCgUCCaggUCGUCGACc -3' miRNA: 3'- -AGCUGU----UGAGC-GCAG-AGG---AGUGGCUG- -5' |
|||||||
16393 | 3' | -54.5 | NC_004084.1 | + | 39560 | 0.68 | 0.662273 |
Target: 5'- aUCGAgGGCcUUGUugGcCUCCUCAUCGGCg -3' miRNA: 3'- -AGCUgUUG-AGCG--CaGAGGAGUGGCUG- -5' |
|||||||
16393 | 3' | -54.5 | NC_004084.1 | + | 21521 | 0.68 | 0.651351 |
Target: 5'- uUCGAgGcGCUCGCGgacaUCCUCA-CGACu -3' miRNA: 3'- -AGCUgU-UGAGCGCag--AGGAGUgGCUG- -5' |
|||||||
16393 | 3' | -54.5 | NC_004084.1 | + | 36726 | 0.74 | 0.342204 |
Target: 5'- aUCGGCGGCaUCGaCGUCggggCCgUCACCGAUc -3' miRNA: 3'- -AGCUGUUG-AGC-GCAGa---GG-AGUGGCUG- -5' |
|||||||
16393 | 3' | -54.5 | NC_004084.1 | + | 12026 | 0.66 | 0.788049 |
Target: 5'- aCGuCAGCUCGauCGagUCCUCGCUGGu -3' miRNA: 3'- aGCuGUUGAGC--GCagAGGAGUGGCUg -5' |
|||||||
16393 | 3' | -54.5 | NC_004084.1 | + | 18247 | 0.66 | 0.788049 |
Target: 5'- gUGACGuGCUCGa-UCUCCaucguccacUCGCCGGCg -3' miRNA: 3'- aGCUGU-UGAGCgcAGAGG---------AGUGGCUG- -5' |
|||||||
16393 | 3' | -54.5 | NC_004084.1 | + | 43075 | 0.66 | 0.778185 |
Target: 5'- cUCGA----UCGCGUCgaguUCCUCAUCGAg -3' miRNA: 3'- -AGCUguugAGCGCAG----AGGAGUGGCUg -5' |
|||||||
16393 | 3' | -54.5 | NC_004084.1 | + | 32427 | 0.66 | 0.778185 |
Target: 5'- aUCGcGCGgauGCUCGUG-CUCUUCGCCuGCg -3' miRNA: 3'- -AGC-UGU---UGAGCGCaGAGGAGUGGcUG- -5' |
|||||||
16393 | 3' | -54.5 | NC_004084.1 | + | 30615 | 0.67 | 0.741517 |
Target: 5'- gUCGACGaacagcgucauucgcGCUCGCG-CagCUCGCgGACc -3' miRNA: 3'- -AGCUGU---------------UGAGCGCaGagGAGUGgCUG- -5' |
|||||||
16393 | 3' | -54.5 | NC_004084.1 | + | 8002 | 0.68 | 0.673167 |
Target: 5'- gUCGGgAuC-CGCGUCUUCUucgCGCCGACu -3' miRNA: 3'- -AGCUgUuGaGCGCAGAGGA---GUGGCUG- -5' |
|||||||
16393 | 3' | -54.5 | NC_004084.1 | + | 2866 | 0.67 | 0.716252 |
Target: 5'- uUCGGCGGgUC-CGUCUCaCcCAUCGGCg -3' miRNA: 3'- -AGCUGUUgAGcGCAGAG-GaGUGGCUG- -5' |
|||||||
16393 | 3' | -54.5 | NC_004084.1 | + | 53187 | 0.67 | 0.747741 |
Target: 5'- cUCGGCGGCUC-CGUCgagugCCUC-CUGGa -3' miRNA: 3'- -AGCUGUUGAGcGCAGa----GGAGuGGCUg -5' |
|||||||
16393 | 3' | -54.5 | NC_004084.1 | + | 7571 | 0.66 | 0.807284 |
Target: 5'- gUCGGcCGACUUGCucGUCUCgccUUCGCCGuCg -3' miRNA: 3'- -AGCU-GUUGAGCG--CAGAG---GAGUGGCuG- -5' |
|||||||
16393 | 3' | -54.5 | NC_004084.1 | + | 21801 | 0.67 | 0.704505 |
Target: 5'- gCGAUGACgUCGCGgaUCUCgUCgacggucGCCGACg -3' miRNA: 3'- aGCUGUUG-AGCGC--AGAGgAG-------UGGCUG- -5' |
|||||||
16393 | 3' | -54.5 | NC_004084.1 | + | 57869 | 0.66 | 0.797753 |
Target: 5'- cUGGCGAUcucgUCGUGgagCUCCUCGaCGGCg -3' miRNA: 3'- aGCUGUUG----AGCGCa--GAGGAGUgGCUG- -5' |
|||||||
16393 | 3' | -54.5 | NC_004084.1 | + | 57336 | 0.66 | 0.768172 |
Target: 5'- -aGACcACcuUCGCGUCa--UCGCCGACg -3' miRNA: 3'- agCUGuUG--AGCGCAGaggAGUGGCUG- -5' |
|||||||
16393 | 3' | -54.5 | NC_004084.1 | + | 39794 | 0.68 | 0.69483 |
Target: 5'- gUCGACGGCgu-CGUCgCCgUCACUGGCg -3' miRNA: 3'- -AGCUGUUGagcGCAGaGG-AGUGGCUG- -5' |
|||||||
16393 | 3' | -54.5 | NC_004084.1 | + | 47637 | 0.68 | 0.662273 |
Target: 5'- cUCGA--ACg-GCGUCUCCUCcACUGGCc -3' miRNA: 3'- -AGCUguUGagCGCAGAGGAG-UGGCUG- -5' |
|||||||
16393 | 3' | -54.5 | NC_004084.1 | + | 20763 | 0.66 | 0.797753 |
Target: 5'- cCGGCgggaAugUUG-GUCUCUUCGCCGAg -3' miRNA: 3'- aGCUG----UugAGCgCAGAGGAGUGGCUg -5' |
|||||||
16393 | 3' | -54.5 | NC_004084.1 | + | 47535 | 0.66 | 0.788049 |
Target: 5'- gUCGACAucgaccauuccgGgUCGaaucggauCGUCUUgUCGCCGACg -3' miRNA: 3'- -AGCUGU------------UgAGC--------GCAGAGgAGUGGCUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home