Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16393 | 3' | -54.5 | NC_004084.1 | + | 6224 | 0.68 | 0.640411 |
Target: 5'- -gGAgAACcCGUGUaggaCCUCACCGACg -3' miRNA: 3'- agCUgUUGaGCGCAga--GGAGUGGCUG- -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 17473 | 0.72 | 0.421607 |
Target: 5'- cUCGAUcACUCugccgGCGagaUCCUCACCGGCg -3' miRNA: 3'- -AGCUGuUGAG-----CGCag-AGGAGUGGCUG- -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 4390 | 0.67 | 0.737346 |
Target: 5'- cUCGACGACgccCGCGa----UCACCGGCg -3' miRNA: 3'- -AGCUGUUGa--GCGCagaggAGUGGCUG- -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 19094 | 0.69 | 0.607587 |
Target: 5'- uUCGA--GCUCgGCGUCgucgUCCUCACuCGAUg -3' miRNA: 3'- -AGCUguUGAG-CGCAG----AGGAGUG-GCUG- -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 40304 | 0.7 | 0.564153 |
Target: 5'- aUGGcCAGCUucCGCGUCUCCUCGuCCaGCu -3' miRNA: 3'- aGCU-GUUGA--GCGCAGAGGAGU-GGcUG- -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 36726 | 0.74 | 0.342204 |
Target: 5'- aUCGGCGGCaUCGaCGUCggggCCgUCACCGAUc -3' miRNA: 3'- -AGCUGUUG-AGC-GCAGa---GG-AGUGGCUG- -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 47637 | 0.68 | 0.662273 |
Target: 5'- cUCGA--ACg-GCGUCUCCUCcACUGGCc -3' miRNA: 3'- -AGCUguUGagCGCAGAGGAG-UGGCUG- -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 35381 | 0.69 | 0.595586 |
Target: 5'- cCGACGAacgucagcaggcuCUCGCG-CUgaCUUCGCCGACu -3' miRNA: 3'- aGCUGUU-------------GAGCGCaGA--GGAGUGGCUG- -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 9647 | 0.69 | 0.596676 |
Target: 5'- uUCGGCGACUC-CGguacCUCCUCguaGCCGuACu -3' miRNA: 3'- -AGCUGUUGAGcGCa---GAGGAG---UGGC-UG- -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 27000 | 0.68 | 0.684023 |
Target: 5'- aUCG-CGGC-CGCGUCgucugcgaCUUCGCCGAUa -3' miRNA: 3'- -AGCuGUUGaGCGCAGa-------GGAGUGGCUG- -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 39649 | 0.66 | 0.78707 |
Target: 5'- gCGACGccgaggaACUCGCGcgCUCCaaccCCGACu -3' miRNA: 3'- aGCUGU-------UGAGCGCa-GAGGagu-GGCUG- -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 35146 | 0.74 | 0.334076 |
Target: 5'- gUCGGCcGCUCG-GUCUCCagACCGAa -3' miRNA: 3'- -AGCUGuUGAGCgCAGAGGagUGGCUg -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 30892 | 0.66 | 0.797753 |
Target: 5'- cUCGACAACggCGCGaUCUCC---CCGGa -3' miRNA: 3'- -AGCUGUUGa-GCGC-AGAGGaguGGCUg -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 57818 | 0.7 | 0.542729 |
Target: 5'- aCGAuCAACUCGagggCgUCCUCACCGAa -3' miRNA: 3'- aGCU-GUUGAGCgca-G-AGGAGUGGCUg -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 28120 | 0.66 | 0.806339 |
Target: 5'- cUCGACGAg-CGCGUCaaugacgUCCUCGucUCGAUa -3' miRNA: 3'- -AGCUGUUgaGCGCAG-------AGGAGU--GGCUG- -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 3813 | 0.7 | 0.564153 |
Target: 5'- aCGGCGAcCUCGauccaGUCUUCgucgaCGCCGACg -3' miRNA: 3'- aGCUGUU-GAGCg----CAGAGGa----GUGGCUG- -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 12930 | 0.67 | 0.726846 |
Target: 5'- gCGACGAUgaCGaCGUCUUCgUgACCGACg -3' miRNA: 3'- aGCUGUUGa-GC-GCAGAGG-AgUGGCUG- -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 48997 | 0.66 | 0.788049 |
Target: 5'- cCGAgAGCgCGUG-CUCgUCAUCGGCa -3' miRNA: 3'- aGCUgUUGaGCGCaGAGgAGUGGCUG- -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 31685 | 0.67 | 0.705576 |
Target: 5'- aCGcCGAgaUCGgGUCUCCaaaUCGCCGAUa -3' miRNA: 3'- aGCuGUUg-AGCgCAGAGG---AGUGGCUG- -5' |
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16393 | 3' | -54.5 | NC_004084.1 | + | 19681 | 0.68 | 0.673167 |
Target: 5'- gUCGACGGCaUCGCGU----UCACCGAg -3' miRNA: 3'- -AGCUGUUG-AGCGCAgaggAGUGGCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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