miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16393 5' -53.7 NC_004084.1 + 8011 0.66 0.849821
Target:  5'- aUGUUGAgGGUcGGGauccgcgucuucuUCGCGCCGACUGu -3'
miRNA:   3'- cGCAGCUaCUA-CCU-------------AGCGCGGUUGGC- -5'
16393 5' -53.7 NC_004084.1 + 17381 0.66 0.842099
Target:  5'- cCGcCGGUGA-GGAUCuCGCCGGCa- -3'
miRNA:   3'- cGCaGCUACUaCCUAGcGCGGUUGgc -5'
16393 5' -53.7 NC_004084.1 + 2769 0.66 0.842099
Target:  5'- ---aCGA-GGUGGAgCGCGCCGAUgGg -3'
miRNA:   3'- cgcaGCUaCUACCUaGCGCGGUUGgC- -5'
16393 5' -53.7 NC_004084.1 + 16137 0.66 0.839486
Target:  5'- ---aCGGUGAUGGAcgaacugcgcgucgUCGCGuCCGAUCu -3'
miRNA:   3'- cgcaGCUACUACCU--------------AGCGC-GGUUGGc -5'
16393 5' -53.7 NC_004084.1 + 15655 0.66 0.833312
Target:  5'- gGCGUCGAgacUGAagaggaaaUGGAgaacguggcgcUCGCaGCCGAUCa -3'
miRNA:   3'- -CGCAGCU---ACU--------ACCU-----------AGCG-CGGUUGGc -5'
16393 5' -53.7 NC_004084.1 + 24508 0.66 0.824315
Target:  5'- --uUCGAgaauagGGUGGAUC-CGUCAACCu -3'
miRNA:   3'- cgcAGCUa-----CUACCUAGcGCGGUUGGc -5'
16393 5' -53.7 NC_004084.1 + 1898 0.67 0.805731
Target:  5'- -aGUCGggGAUGGG----GCCGACCGa -3'
miRNA:   3'- cgCAGCuaCUACCUagcgCGGUUGGC- -5'
16393 5' -53.7 NC_004084.1 + 41783 0.67 0.796163
Target:  5'- -gGUCGAaGAccgGGA-CGCGCUcGCCGg -3'
miRNA:   3'- cgCAGCUaCUa--CCUaGCGCGGuUGGC- -5'
16393 5' -53.7 NC_004084.1 + 20386 0.67 0.796163
Target:  5'- aUGUCGAUGAUGGccuGUUGCcCCGAgCu -3'
miRNA:   3'- cGCAGCUACUACC---UAGCGcGGUUgGc -5'
16393 5' -53.7 NC_004084.1 + 39632 0.67 0.786426
Target:  5'- -gGUCGAguc--GAUCGCGCUGGCCa -3'
miRNA:   3'- cgCAGCUacuacCUAGCGCGGUUGGc -5'
16393 5' -53.7 NC_004084.1 + 29203 0.67 0.776529
Target:  5'- gGCGUCGAUGuuccaGAgCGCGUCGACg- -3'
miRNA:   3'- -CGCAGCUACuac--CUaGCGCGGUUGgc -5'
16393 5' -53.7 NC_004084.1 + 52147 0.67 0.766485
Target:  5'- uGCGUCG-UGAucaUGGA---CGCCGACCa -3'
miRNA:   3'- -CGCAGCuACU---ACCUagcGCGGUUGGc -5'
16393 5' -53.7 NC_004084.1 + 35418 0.67 0.766485
Target:  5'- cGCGaCGA-GGUGGAcgucggcgaccUCGgauaGCCAGCCGa -3'
miRNA:   3'- -CGCaGCUaCUACCU-----------AGCg---CGGUUGGC- -5'
16393 5' -53.7 NC_004084.1 + 47197 0.67 0.766485
Target:  5'- gGCGUCGcaccgGAUGcag-GUGCCGACCGg -3'
miRNA:   3'- -CGCAGCua---CUACcuagCGCGGUUGGC- -5'
16393 5' -53.7 NC_004084.1 + 5743 0.67 0.766485
Target:  5'- uCGUCGAcggUGGcuuucUGGAUCcgcuCGCCAGCCu -3'
miRNA:   3'- cGCAGCU---ACU-----ACCUAGc---GCGGUUGGc -5'
16393 5' -53.7 NC_004084.1 + 49685 0.67 0.756304
Target:  5'- uCGUCcaGGUGGUGGAgCGUGUC-GCCGa -3'
miRNA:   3'- cGCAG--CUACUACCUaGCGCGGuUGGC- -5'
16393 5' -53.7 NC_004084.1 + 8855 0.68 0.714436
Target:  5'- cCGUCGA-GAUGGAgUCG-GCguACCGg -3'
miRNA:   3'- cGCAGCUaCUACCU-AGCgCGguUGGC- -5'
16393 5' -53.7 NC_004084.1 + 5427 0.68 0.703739
Target:  5'- --aUCGGUGAagaaUGGAUCGCGaucggCGACCa -3'
miRNA:   3'- cgcAGCUACU----ACCUAGCGCg----GUUGGc -5'
16393 5' -53.7 NC_004084.1 + 40251 0.69 0.671279
Target:  5'- --aUCGAgggGAUGGAguucacgcUCGCGCUGAUCGa -3'
miRNA:   3'- cgcAGCUa--CUACCU--------AGCGCGGUUGGC- -5'
16393 5' -53.7 NC_004084.1 + 48311 0.7 0.616583
Target:  5'- uGCGUCGAaGAUGGGcCGaagGUCGGCCu -3'
miRNA:   3'- -CGCAGCUaCUACCUaGCg--CGGUUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.