miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16393 5' -53.7 NC_004084.1 + 10660 1.12 0.001179
Target:  5'- gGCGUCGAUGAUGGAUCGCGCCAACCGg -3'
miRNA:   3'- -CGCAGCUACUACCUAGCGCGGUUGGC- -5'
16393 5' -53.7 NC_004084.1 + 55522 0.84 0.089665
Target:  5'- cGCGUUGAUGAUGGGauccuccgcgaUCGCGCUGGCUGg -3'
miRNA:   3'- -CGCAGCUACUACCU-----------AGCGCGGUUGGC- -5'
16393 5' -53.7 NC_004084.1 + 29143 0.77 0.252701
Target:  5'- gGUGUCGGcggugcUGGUGuGGUCGCGCgGGCCGu -3'
miRNA:   3'- -CGCAGCU------ACUAC-CUAGCGCGgUUGGC- -5'
16393 5' -53.7 NC_004084.1 + 28956 0.77 0.259252
Target:  5'- aGCGUCGAUG--GGcAUCGCGCCcacGCCGc -3'
miRNA:   3'- -CGCAGCUACuaCC-UAGCGCGGu--UGGC- -5'
16393 5' -53.7 NC_004084.1 + 38523 0.75 0.348839
Target:  5'- --aUCGAUGGUGGAUCG-GCgGACCa -3'
miRNA:   3'- cgcAGCUACUACCUAGCgCGgUUGGc -5'
16393 5' -53.7 NC_004084.1 + 3335 0.74 0.410471
Target:  5'- cGCGUCucgGAcGggGGAggagCGCGCCGGCCa -3'
miRNA:   3'- -CGCAG---CUaCuaCCUa---GCGCGGUUGGc -5'
16393 5' -53.7 NC_004084.1 + 43918 0.73 0.458425
Target:  5'- gGCGUCGcgGAUGucUCGCGCCcACg- -3'
miRNA:   3'- -CGCAGCuaCUACcuAGCGCGGuUGgc -5'
16393 5' -53.7 NC_004084.1 + 3901 0.72 0.468372
Target:  5'- gGCGUCGAcGAagacUGGAUCGagguCGCCGuuACCGu -3'
miRNA:   3'- -CGCAGCUaCU----ACCUAGC----GCGGU--UGGC- -5'
16393 5' -53.7 NC_004084.1 + 26343 0.71 0.530185
Target:  5'- aGCGguucuugCGAUGAUGGA-CGC-CgCAACCGa -3'
miRNA:   3'- -CGCa------GCUACUACCUaGCGcG-GUUGGC- -5'
16393 5' -53.7 NC_004084.1 + 19259 0.71 0.55898
Target:  5'- gGCGUCGAUGG-GGAUCaGCGucCCAuucacgauguguguACCGg -3'
miRNA:   3'- -CGCAGCUACUaCCUAG-CGC--GGU--------------UGGC- -5'
16393 5' -53.7 NC_004084.1 + 25779 0.71 0.562208
Target:  5'- aGCGUgGAUGAggGGAUCGgGgCAGCa- -3'
miRNA:   3'- -CGCAgCUACUa-CCUAGCgCgGUUGgc -5'
16393 5' -53.7 NC_004084.1 + 54475 0.7 0.594731
Target:  5'- gGCGUCGAcugGAacgGcGAUCGCGUCAgagugaucuGCCGa -3'
miRNA:   3'- -CGCAGCUa--CUa--C-CUAGCGCGGU---------UGGC- -5'
16393 5' -53.7 NC_004084.1 + 44821 0.7 0.605646
Target:  5'- -gGUCGGUGAcGGuAUCGaGCUGACCGa -3'
miRNA:   3'- cgCAGCUACUaCC-UAGCgCGGUUGGC- -5'
16393 5' -53.7 NC_004084.1 + 48311 0.7 0.616583
Target:  5'- uGCGUCGAaGAUGGGcCGaagGUCGGCCu -3'
miRNA:   3'- -CGCAGCUaCUACCUaGCg--CGGUUGGc -5'
16393 5' -53.7 NC_004084.1 + 40251 0.69 0.671279
Target:  5'- --aUCGAgggGAUGGAguucacgcUCGCGCUGAUCGa -3'
miRNA:   3'- cgcAGCUa--CUACCU--------AGCGCGGUUGGC- -5'
16393 5' -53.7 NC_004084.1 + 5427 0.68 0.703739
Target:  5'- --aUCGGUGAagaaUGGAUCGCGaucggCGACCa -3'
miRNA:   3'- cgcAGCUACU----ACCUAGCGCg----GUUGGc -5'
16393 5' -53.7 NC_004084.1 + 8855 0.68 0.714436
Target:  5'- cCGUCGA-GAUGGAgUCG-GCguACCGg -3'
miRNA:   3'- cGCAGCUaCUACCU-AGCgCGguUGGC- -5'
16393 5' -53.7 NC_004084.1 + 49685 0.67 0.756304
Target:  5'- uCGUCcaGGUGGUGGAgCGUGUC-GCCGa -3'
miRNA:   3'- cGCAG--CUACUACCUaGCGCGGuUGGC- -5'
16393 5' -53.7 NC_004084.1 + 47197 0.67 0.766485
Target:  5'- gGCGUCGcaccgGAUGcag-GUGCCGACCGg -3'
miRNA:   3'- -CGCAGCua---CUACcuagCGCGGUUGGC- -5'
16393 5' -53.7 NC_004084.1 + 5743 0.67 0.766485
Target:  5'- uCGUCGAcggUGGcuuucUGGAUCcgcuCGCCAGCCu -3'
miRNA:   3'- cGCAGCU---ACU-----ACCUAGc---GCGGUUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.