Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16393 | 5' | -53.7 | NC_004084.1 | + | 1898 | 0.67 | 0.805731 |
Target: 5'- -aGUCGggGAUGGG----GCCGACCGa -3' miRNA: 3'- cgCAGCuaCUACCUagcgCGGUUGGC- -5' |
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16393 | 5' | -53.7 | NC_004084.1 | + | 2769 | 0.66 | 0.842099 |
Target: 5'- ---aCGA-GGUGGAgCGCGCCGAUgGg -3' miRNA: 3'- cgcaGCUaCUACCUaGCGCGGUUGgC- -5' |
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16393 | 5' | -53.7 | NC_004084.1 | + | 3335 | 0.74 | 0.410471 |
Target: 5'- cGCGUCucgGAcGggGGAggagCGCGCCGGCCa -3' miRNA: 3'- -CGCAG---CUaCuaCCUa---GCGCGGUUGGc -5' |
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16393 | 5' | -53.7 | NC_004084.1 | + | 3901 | 0.72 | 0.468372 |
Target: 5'- gGCGUCGAcGAagacUGGAUCGagguCGCCGuuACCGu -3' miRNA: 3'- -CGCAGCUaCU----ACCUAGC----GCGGU--UGGC- -5' |
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16393 | 5' | -53.7 | NC_004084.1 | + | 5427 | 0.68 | 0.703739 |
Target: 5'- --aUCGGUGAagaaUGGAUCGCGaucggCGACCa -3' miRNA: 3'- cgcAGCUACU----ACCUAGCGCg----GUUGGc -5' |
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16393 | 5' | -53.7 | NC_004084.1 | + | 5743 | 0.67 | 0.766485 |
Target: 5'- uCGUCGAcggUGGcuuucUGGAUCcgcuCGCCAGCCu -3' miRNA: 3'- cGCAGCU---ACU-----ACCUAGc---GCGGUUGGc -5' |
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16393 | 5' | -53.7 | NC_004084.1 | + | 8011 | 0.66 | 0.849821 |
Target: 5'- aUGUUGAgGGUcGGGauccgcgucuucuUCGCGCCGACUGu -3' miRNA: 3'- cGCAGCUaCUA-CCU-------------AGCGCGGUUGGC- -5' |
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16393 | 5' | -53.7 | NC_004084.1 | + | 8855 | 0.68 | 0.714436 |
Target: 5'- cCGUCGA-GAUGGAgUCG-GCguACCGg -3' miRNA: 3'- cGCAGCUaCUACCU-AGCgCGguUGGC- -5' |
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16393 | 5' | -53.7 | NC_004084.1 | + | 10660 | 1.12 | 0.001179 |
Target: 5'- gGCGUCGAUGAUGGAUCGCGCCAACCGg -3' miRNA: 3'- -CGCAGCUACUACCUAGCGCGGUUGGC- -5' |
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16393 | 5' | -53.7 | NC_004084.1 | + | 15655 | 0.66 | 0.833312 |
Target: 5'- gGCGUCGAgacUGAagaggaaaUGGAgaacguggcgcUCGCaGCCGAUCa -3' miRNA: 3'- -CGCAGCU---ACU--------ACCU-----------AGCG-CGGUUGGc -5' |
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16393 | 5' | -53.7 | NC_004084.1 | + | 16137 | 0.66 | 0.839486 |
Target: 5'- ---aCGGUGAUGGAcgaacugcgcgucgUCGCGuCCGAUCu -3' miRNA: 3'- cgcaGCUACUACCU--------------AGCGC-GGUUGGc -5' |
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16393 | 5' | -53.7 | NC_004084.1 | + | 17381 | 0.66 | 0.842099 |
Target: 5'- cCGcCGGUGA-GGAUCuCGCCGGCa- -3' miRNA: 3'- cGCaGCUACUaCCUAGcGCGGUUGgc -5' |
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16393 | 5' | -53.7 | NC_004084.1 | + | 19259 | 0.71 | 0.55898 |
Target: 5'- gGCGUCGAUGG-GGAUCaGCGucCCAuucacgauguguguACCGg -3' miRNA: 3'- -CGCAGCUACUaCCUAG-CGC--GGU--------------UGGC- -5' |
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16393 | 5' | -53.7 | NC_004084.1 | + | 20386 | 0.67 | 0.796163 |
Target: 5'- aUGUCGAUGAUGGccuGUUGCcCCGAgCu -3' miRNA: 3'- cGCAGCUACUACC---UAGCGcGGUUgGc -5' |
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16393 | 5' | -53.7 | NC_004084.1 | + | 24508 | 0.66 | 0.824315 |
Target: 5'- --uUCGAgaauagGGUGGAUC-CGUCAACCu -3' miRNA: 3'- cgcAGCUa-----CUACCUAGcGCGGUUGGc -5' |
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16393 | 5' | -53.7 | NC_004084.1 | + | 25779 | 0.71 | 0.562208 |
Target: 5'- aGCGUgGAUGAggGGAUCGgGgCAGCa- -3' miRNA: 3'- -CGCAgCUACUa-CCUAGCgCgGUUGgc -5' |
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16393 | 5' | -53.7 | NC_004084.1 | + | 26343 | 0.71 | 0.530185 |
Target: 5'- aGCGguucuugCGAUGAUGGA-CGC-CgCAACCGa -3' miRNA: 3'- -CGCa------GCUACUACCUaGCGcG-GUUGGC- -5' |
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16393 | 5' | -53.7 | NC_004084.1 | + | 28956 | 0.77 | 0.259252 |
Target: 5'- aGCGUCGAUG--GGcAUCGCGCCcacGCCGc -3' miRNA: 3'- -CGCAGCUACuaCC-UAGCGCGGu--UGGC- -5' |
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16393 | 5' | -53.7 | NC_004084.1 | + | 29143 | 0.77 | 0.252701 |
Target: 5'- gGUGUCGGcggugcUGGUGuGGUCGCGCgGGCCGu -3' miRNA: 3'- -CGCAGCU------ACUAC-CUAGCGCGgUUGGC- -5' |
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16393 | 5' | -53.7 | NC_004084.1 | + | 29203 | 0.67 | 0.776529 |
Target: 5'- gGCGUCGAUGuuccaGAgCGCGUCGACg- -3' miRNA: 3'- -CGCAGCUACuac--CUaGCGCGGUUGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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