miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16393 5' -53.7 NC_004084.1 + 35418 0.67 0.766485
Target:  5'- cGCGaCGA-GGUGGAcgucggcgaccUCGgauaGCCAGCCGa -3'
miRNA:   3'- -CGCaGCUaCUACCU-----------AGCg---CGGUUGGC- -5'
16393 5' -53.7 NC_004084.1 + 38523 0.75 0.348839
Target:  5'- --aUCGAUGGUGGAUCG-GCgGACCa -3'
miRNA:   3'- cgcAGCUACUACCUAGCgCGgUUGGc -5'
16393 5' -53.7 NC_004084.1 + 39632 0.67 0.786426
Target:  5'- -gGUCGAguc--GAUCGCGCUGGCCa -3'
miRNA:   3'- cgCAGCUacuacCUAGCGCGGUUGGc -5'
16393 5' -53.7 NC_004084.1 + 40251 0.69 0.671279
Target:  5'- --aUCGAgggGAUGGAguucacgcUCGCGCUGAUCGa -3'
miRNA:   3'- cgcAGCUa--CUACCU--------AGCGCGGUUGGC- -5'
16393 5' -53.7 NC_004084.1 + 41783 0.67 0.796163
Target:  5'- -gGUCGAaGAccgGGA-CGCGCUcGCCGg -3'
miRNA:   3'- cgCAGCUaCUa--CCUaGCGCGGuUGGC- -5'
16393 5' -53.7 NC_004084.1 + 43918 0.73 0.458425
Target:  5'- gGCGUCGcgGAUGucUCGCGCCcACg- -3'
miRNA:   3'- -CGCAGCuaCUACcuAGCGCGGuUGgc -5'
16393 5' -53.7 NC_004084.1 + 44821 0.7 0.605646
Target:  5'- -gGUCGGUGAcGGuAUCGaGCUGACCGa -3'
miRNA:   3'- cgCAGCUACUaCC-UAGCgCGGUUGGC- -5'
16393 5' -53.7 NC_004084.1 + 47197 0.67 0.766485
Target:  5'- gGCGUCGcaccgGAUGcag-GUGCCGACCGg -3'
miRNA:   3'- -CGCAGCua---CUACcuagCGCGGUUGGC- -5'
16393 5' -53.7 NC_004084.1 + 48311 0.7 0.616583
Target:  5'- uGCGUCGAaGAUGGGcCGaagGUCGGCCu -3'
miRNA:   3'- -CGCAGCUaCUACCUaGCg--CGGUUGGc -5'
16393 5' -53.7 NC_004084.1 + 49685 0.67 0.756304
Target:  5'- uCGUCcaGGUGGUGGAgCGUGUC-GCCGa -3'
miRNA:   3'- cGCAG--CUACUACCUaGCGCGGuUGGC- -5'
16393 5' -53.7 NC_004084.1 + 52147 0.67 0.766485
Target:  5'- uGCGUCG-UGAucaUGGA---CGCCGACCa -3'
miRNA:   3'- -CGCAGCuACU---ACCUagcGCGGUUGGc -5'
16393 5' -53.7 NC_004084.1 + 54475 0.7 0.594731
Target:  5'- gGCGUCGAcugGAacgGcGAUCGCGUCAgagugaucuGCCGa -3'
miRNA:   3'- -CGCAGCUa--CUa--C-CUAGCGCGGU---------UGGC- -5'
16393 5' -53.7 NC_004084.1 + 55522 0.84 0.089665
Target:  5'- cGCGUUGAUGAUGGGauccuccgcgaUCGCGCUGGCUGg -3'
miRNA:   3'- -CGCAGCUACUACCU-----------AGCGCGGUUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.