miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16393 5' -53.7 NC_004084.1 + 10660 1.12 0.001179
Target:  5'- gGCGUCGAUGAUGGAUCGCGCCAACCGg -3'
miRNA:   3'- -CGCAGCUACUACCUAGCGCGGUUGGC- -5'
16393 5' -53.7 NC_004084.1 + 17381 0.66 0.842099
Target:  5'- cCGcCGGUGA-GGAUCuCGCCGGCa- -3'
miRNA:   3'- cGCaGCUACUaCCUAGcGCGGUUGgc -5'
16393 5' -53.7 NC_004084.1 + 2769 0.66 0.842099
Target:  5'- ---aCGA-GGUGGAgCGCGCCGAUgGg -3'
miRNA:   3'- cgcaGCUaCUACCUaGCGCGGUUGgC- -5'
16393 5' -53.7 NC_004084.1 + 16137 0.66 0.839486
Target:  5'- ---aCGGUGAUGGAcgaacugcgcgucgUCGCGuCCGAUCu -3'
miRNA:   3'- cgcaGCUACUACCU--------------AGCGC-GGUUGGc -5'
16393 5' -53.7 NC_004084.1 + 15655 0.66 0.833312
Target:  5'- gGCGUCGAgacUGAagaggaaaUGGAgaacguggcgcUCGCaGCCGAUCa -3'
miRNA:   3'- -CGCAGCU---ACU--------ACCU-----------AGCG-CGGUUGGc -5'
16393 5' -53.7 NC_004084.1 + 1898 0.67 0.805731
Target:  5'- -aGUCGggGAUGGG----GCCGACCGa -3'
miRNA:   3'- cgCAGCuaCUACCUagcgCGGUUGGC- -5'
16393 5' -53.7 NC_004084.1 + 29203 0.67 0.776529
Target:  5'- gGCGUCGAUGuuccaGAgCGCGUCGACg- -3'
miRNA:   3'- -CGCAGCUACuac--CUaGCGCGGUUGgc -5'
16393 5' -53.7 NC_004084.1 + 52147 0.67 0.766485
Target:  5'- uGCGUCG-UGAucaUGGA---CGCCGACCa -3'
miRNA:   3'- -CGCAGCuACU---ACCUagcGCGGUUGGc -5'
16393 5' -53.7 NC_004084.1 + 5427 0.68 0.703739
Target:  5'- --aUCGGUGAagaaUGGAUCGCGaucggCGACCa -3'
miRNA:   3'- cgcAGCUACU----ACCUAGCGCg----GUUGGc -5'
16393 5' -53.7 NC_004084.1 + 40251 0.69 0.671279
Target:  5'- --aUCGAgggGAUGGAguucacgcUCGCGCUGAUCGa -3'
miRNA:   3'- cgcAGCUa--CUACCU--------AGCGCGGUUGGC- -5'
16393 5' -53.7 NC_004084.1 + 48311 0.7 0.616583
Target:  5'- uGCGUCGAaGAUGGGcCGaagGUCGGCCu -3'
miRNA:   3'- -CGCAGCUaCUACCUaGCg--CGGUUGGc -5'
16393 5' -53.7 NC_004084.1 + 55522 0.84 0.089665
Target:  5'- cGCGUUGAUGAUGGGauccuccgcgaUCGCGCUGGCUGg -3'
miRNA:   3'- -CGCAGCUACUACCU-----------AGCGCGGUUGGC- -5'
16393 5' -53.7 NC_004084.1 + 29143 0.77 0.252701
Target:  5'- gGUGUCGGcggugcUGGUGuGGUCGCGCgGGCCGu -3'
miRNA:   3'- -CGCAGCU------ACUAC-CUAGCGCGgUUGGC- -5'
16393 5' -53.7 NC_004084.1 + 28956 0.77 0.259252
Target:  5'- aGCGUCGAUG--GGcAUCGCGCCcacGCCGc -3'
miRNA:   3'- -CGCAGCUACuaCC-UAGCGCGGu--UGGC- -5'
16393 5' -53.7 NC_004084.1 + 38523 0.75 0.348839
Target:  5'- --aUCGAUGGUGGAUCG-GCgGACCa -3'
miRNA:   3'- cgcAGCUACUACCUAGCgCGgUUGGc -5'
16393 5' -53.7 NC_004084.1 + 3335 0.74 0.410471
Target:  5'- cGCGUCucgGAcGggGGAggagCGCGCCGGCCa -3'
miRNA:   3'- -CGCAG---CUaCuaCCUa---GCGCGGUUGGc -5'
16393 5' -53.7 NC_004084.1 + 26343 0.71 0.530185
Target:  5'- aGCGguucuugCGAUGAUGGA-CGC-CgCAACCGa -3'
miRNA:   3'- -CGCa------GCUACUACCUaGCGcG-GUUGGC- -5'
16393 5' -53.7 NC_004084.1 + 44821 0.7 0.605646
Target:  5'- -gGUCGGUGAcGGuAUCGaGCUGACCGa -3'
miRNA:   3'- cgCAGCUACUaCC-UAGCgCGGUUGGC- -5'
16393 5' -53.7 NC_004084.1 + 43918 0.73 0.458425
Target:  5'- gGCGUCGcgGAUGucUCGCGCCcACg- -3'
miRNA:   3'- -CGCAGCuaCUACcuAGCGCGGuUGgc -5'
16393 5' -53.7 NC_004084.1 + 24508 0.66 0.824315
Target:  5'- --uUCGAgaauagGGUGGAUC-CGUCAACCu -3'
miRNA:   3'- cgcAGCUa-----CUACCUAGcGCGGUUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.