miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16394 3' -51.6 NC_004084.1 + 40193 0.66 0.925978
Target:  5'- ---cUCCGGCGAccUCGUucaccUCGAgCUGGa -3'
miRNA:   3'- ucauAGGCCGCU--AGCAca---AGCU-GACC- -5'
16394 3' -51.6 NC_004084.1 + 4463 0.66 0.907306
Target:  5'- ----aCUGGaCGAUCGaGUUCGAgCUGGc -3'
miRNA:   3'- ucauaGGCC-GCUAGCaCAAGCU-GACC- -5'
16394 3' -51.6 NC_004084.1 + 17234 0.67 0.903272
Target:  5'- cGUcgCCGGCGAUCGUccccaucaGUgaaccgccgaccucaUCGACguccUGGa -3'
miRNA:   3'- uCAuaGGCCGCUAGCA--------CA---------------AGCUG----ACC- -5'
16394 3' -51.6 NC_004084.1 + 27156 0.67 0.886158
Target:  5'- cGUcgCgaUGGCGGUCGgaaaGUUCGuuGCUGGa -3'
miRNA:   3'- uCAuaG--GCCGCUAGCa---CAAGC--UGACC- -5'
16394 3' -51.6 NC_004084.1 + 46769 0.67 0.878576
Target:  5'- cGUcgCCGGCGA-CGUGcUCGAaucgcGGa -3'
miRNA:   3'- uCAuaGGCCGCUaGCACaAGCUga---CC- -5'
16394 3' -51.6 NC_004084.1 + 41272 0.68 0.862645
Target:  5'- cGUcgCgGGCG-UCGUGUUCGucccaGCUGa -3'
miRNA:   3'- uCAuaGgCCGCuAGCACAAGC-----UGACc -5'
16394 3' -51.6 NC_004084.1 + 9160 0.68 0.854311
Target:  5'- ----aUCGGCGAUCGUGUcgaggugaucgUCGACg-- -3'
miRNA:   3'- ucauaGGCCGCUAGCACA-----------AGCUGacc -5'
16394 3' -51.6 NC_004084.1 + 52699 0.69 0.80928
Target:  5'- uGGUAUCCGacgcCGggCGUG-UCGACUGc -3'
miRNA:   3'- -UCAUAGGCc---GCuaGCACaAGCUGACc -5'
16394 3' -51.6 NC_004084.1 + 40718 0.7 0.728047
Target:  5'- --cAUCUcaGGCugGAUCGUGgUCGACUGGc -3'
miRNA:   3'- ucaUAGG--CCG--CUAGCACaAGCUGACC- -5'
16394 3' -51.6 NC_004084.1 + 1444 0.71 0.695662
Target:  5'- gAGUAcCCGGCGAUCcUGgaCuACUGGg -3'
miRNA:   3'- -UCAUaGGCCGCUAGcACaaGcUGACC- -5'
16394 3' -51.6 NC_004084.1 + 15001 0.75 0.488902
Target:  5'- --cGUUCGGCGGUC-UGUUCG-CUGGg -3'
miRNA:   3'- ucaUAGGCCGCUAGcACAAGCuGACC- -5'
16394 3' -51.6 NC_004084.1 + 11030 1.12 0.001886
Target:  5'- gAGUAUCCGGCGAUCGUGUUCGACUGGg -3'
miRNA:   3'- -UCAUAGGCCGCUAGCACAAGCUGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.