miRNA display CGI


Results 1 - 18 of 18 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16394 5' -60 NC_004084.1 + 22810 0.66 0.484285
Target:  5'- uACC-GCUGGGcggACUucgucGGGUCGCUcGCCg -3'
miRNA:   3'- uUGGuCGGCCU---UGA-----CCCAGCGGuCGG- -5'
16394 5' -60 NC_004084.1 + 56652 0.66 0.484285
Target:  5'- gGACUGGCgGGAcgaACUGGGgccuCCAGCa -3'
miRNA:   3'- -UUGGUCGgCCU---UGACCCagc-GGUCGg -5'
16394 5' -60 NC_004084.1 + 51347 0.66 0.474378
Target:  5'- -uUCGGCCGGggUgguucgGGGUCGgucgCAGCg -3'
miRNA:   3'- uuGGUCGGCCuuGa-----CCCAGCg---GUCGg -5'
16394 5' -60 NC_004084.1 + 15464 0.66 0.464572
Target:  5'- cACUcGCgGGAACUGGuGUCGCaCuGCa -3'
miRNA:   3'- uUGGuCGgCCUUGACC-CAGCG-GuCGg -5'
16394 5' -60 NC_004084.1 + 57569 0.66 0.454874
Target:  5'- cGGCCuGCUGGuGACgcucccggagGaGGUCGCgGGCCa -3'
miRNA:   3'- -UUGGuCGGCC-UUGa---------C-CCAGCGgUCGG- -5'
16394 5' -60 NC_004084.1 + 46965 0.66 0.454874
Target:  5'- cAGCC-GCCGGGGC-GuGG-CGgCAGCCg -3'
miRNA:   3'- -UUGGuCGGCCUUGaC-CCaGCgGUCGG- -5'
16394 5' -60 NC_004084.1 + 15703 0.66 0.435812
Target:  5'- cAACUcGCCGacgcGACaGGGUCGUCAGCa -3'
miRNA:   3'- -UUGGuCGGCc---UUGaCCCAGCGGUCGg -5'
16394 5' -60 NC_004084.1 + 40907 0.66 0.435812
Target:  5'- cGACCu-CCGGAACgUGGacgucgaUCGCCAGCUu -3'
miRNA:   3'- -UUGGucGGCCUUG-ACCc------AGCGGUCGG- -5'
16394 5' -60 NC_004084.1 + 39745 0.67 0.408107
Target:  5'- uGCCAGUCGGggUUGGaGcgCGCgAGUUc -3'
miRNA:   3'- uUGGUCGGCCuuGACC-Ca-GCGgUCGG- -5'
16394 5' -60 NC_004084.1 + 47911 0.68 0.37293
Target:  5'- gGACCGGCCuGGuugGCgUGaGucccacaguaGUCGCCAGCCg -3'
miRNA:   3'- -UUGGUCGG-CCu--UG-AC-C----------CAGCGGUCGG- -5'
16394 5' -60 NC_004084.1 + 13693 0.68 0.347933
Target:  5'- cGGCCAGUCGaGGACUucaccgaugGGGUCGCUcgAGUUg -3'
miRNA:   3'- -UUGGUCGGC-CUUGA---------CCCAGCGG--UCGG- -5'
16394 5' -60 NC_004084.1 + 20765 0.69 0.316504
Target:  5'- cACCGGCgGGAAUguUGGucucuUCGCCgAGCCa -3'
miRNA:   3'- uUGGUCGgCCUUG--ACCc----AGCGG-UCGG- -5'
16394 5' -60 NC_004084.1 + 10306 0.7 0.280293
Target:  5'- cGACCGGCCGcAACUacGUUGCUGGCCu -3'
miRNA:   3'- -UUGGUCGGCcUUGAccCAGCGGUCGG- -5'
16394 5' -60 NC_004084.1 + 35893 0.7 0.273458
Target:  5'- uGCCGGUCGGAcgucccGCUGGaGUgGCCGcGUCg -3'
miRNA:   3'- uUGGUCGGCCU------UGACC-CAgCGGU-CGG- -5'
16394 5' -60 NC_004084.1 + 38560 0.7 0.266758
Target:  5'- cGACCAGCUcguccaGG--UUGGGUagaGCCGGCCg -3'
miRNA:   3'- -UUGGUCGG------CCuuGACCCAg--CGGUCGG- -5'
16394 5' -60 NC_004084.1 + 44513 0.7 0.258247
Target:  5'- gAACgCGGCCgugcucguccguucGGAAC-GGGUUGCCgAGCCa -3'
miRNA:   3'- -UUG-GUCGG--------------CCUUGaCCCAGCGG-UCGG- -5'
16394 5' -60 NC_004084.1 + 43753 0.73 0.170857
Target:  5'- -cCCGGCCGGGACgcucgcGGGcaucgacugggcgcUCGCCGGCg -3'
miRNA:   3'- uuGGUCGGCCUUGa-----CCC--------------AGCGGUCGg -5'
16394 5' -60 NC_004084.1 + 11065 1.1 0.000301
Target:  5'- gAACCAGCCGGAACUGGGUCGCCAGCCg -3'
miRNA:   3'- -UUGGUCGGCCUUGACCCAGCGGUCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.