miRNA display CGI

Results 1 - 8 of 8 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
16395	5'	-60.7	NC_004084.1	+	19175	0.66	0.431766
	Target:  5'- -gCCGCCGCGGuGCugaUCGaCGUcGACGUAGa -3' miRNA:   3'- agGGUGGCGUC-CG---AGC-GCA-CUGCGUU- -5'
16395	5'	-60.7	NC_004084.1	+	41996	0.66	0.42248
	Target:  5'- aUCgCCACaGCAGGCgaUCGCGUcGcCGCGGu -3' miRNA:   3'- -AG-GGUGgCGUCCG--AGCGCA-CuGCGUU- -5'
16395	5'	-60.7	NC_004084.1	+	25118	0.67	0.377915
	Target:  5'- aCCCACaCGCGcuccgugcaacGGCU-GCGUcGACGCAc -3' miRNA:   3'- aGGGUG-GCGU-----------CCGAgCGCA-CUGCGUu -5'
16395	5'	-60.7	NC_004084.1	+	29630	0.68	0.336621
	Target:  5'- cUCgCCugCGCGGGgUUGaaCGUGACGCu- -3' miRNA:   3'- -AG-GGugGCGUCCgAGC--GCACUGCGuu -5'
16395	5'	-60.7	NC_004084.1	+	40575	0.68	0.328767
	Target:  5'- gUCCCACCuGCAGGUcgaucaggucgUCGCGUucGAgGCc- -3' miRNA:   3'- -AGGGUGG-CGUCCG-----------AGCGCA--CUgCGuu -5'
16395	5'	-60.7	NC_004084.1	+	27790	0.69	0.284505
	Target:  5'- cUCCuCACC-CGGGaacagcgUCGCGUGACGCu- -3' miRNA:   3'- -AGG-GUGGcGUCCg------AGCGCACUGCGuu -5'
16395	5'	-60.7	NC_004084.1	+	34953	0.73	0.153399
	Target:  5'- cUCCCGCCaCAGGUUCGUc-GGCGCAAg -3' miRNA:   3'- -AGGGUGGcGUCCGAGCGcaCUGCGUU- -5'
16395	5'	-60.7	NC_004084.1	+	11219	1.06	0.000494
	Target:  5'- gUCCCACCGCAGGCUCGCGUGACGCAAc -3' miRNA:   3'- -AGGGUGGCGUCCGAGCGCACUGCGUU- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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