Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16396 | 3' | -53 | NC_004084.1 | + | 2005 | 0.7 | 0.615203 |
Target: 5'- uCGAGGACgCGAUCGAGUUcGACu--- -3' miRNA: 3'- cGCUCCUGaGCUAGCUCGA-CUGcaug -5' |
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16396 | 3' | -53 | NC_004084.1 | + | 3062 | 0.67 | 0.796359 |
Target: 5'- uCGAGGaACUCG-UCGAcgggccGCUcgucGACGUGCg -3' miRNA: 3'- cGCUCC-UGAGCuAGCU------CGA----CUGCAUG- -5' |
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16396 | 3' | -53 | NC_004084.1 | + | 4455 | 0.7 | 0.670375 |
Target: 5'- cGCGcccgacuGGACgaUCGAguUCGAGCUGGCGa-- -3' miRNA: 3'- -CGCu------CCUG--AGCU--AGCUCGACUGCaug -5' |
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16396 | 3' | -53 | NC_004084.1 | + | 5357 | 0.66 | 0.851276 |
Target: 5'- gGCGAGGACUgGGaCGAuCUcGACGUc- -3' miRNA: 3'- -CGCUCCUGAgCUaGCUcGA-CUGCAug -5' |
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16396 | 3' | -53 | NC_004084.1 | + | 5626 | 0.67 | 0.824735 |
Target: 5'- cCGAGGACgaaaUUGAagcacUCGAgGCUGGCGaGCg -3' miRNA: 3'- cGCUCCUG----AGCU-----AGCU-CGACUGCaUG- -5' |
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16396 | 3' | -53 | NC_004084.1 | + | 8188 | 0.66 | 0.875737 |
Target: 5'- cGCaGAGGACUCGuUCGAGaaucagaacGACGg-- -3' miRNA: 3'- -CG-CUCCUGAGCuAGCUCga-------CUGCaug -5' |
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16396 | 3' | -53 | NC_004084.1 | + | 8233 | 0.68 | 0.766429 |
Target: 5'- uGCaGAGGGCgacgucgagaCGAUCGAcgccGCUGACG-ACa -3' miRNA: 3'- -CG-CUCCUGa---------GCUAGCU----CGACUGCaUG- -5' |
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16396 | 3' | -53 | NC_004084.1 | + | 8623 | 0.67 | 0.786541 |
Target: 5'- gGUGAGGACgUCGAucUCGAGgUcGgGUACa -3' miRNA: 3'- -CGCUCCUG-AGCU--AGCUCgAcUgCAUG- -5' |
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16396 | 3' | -53 | NC_004084.1 | + | 9112 | 0.66 | 0.833798 |
Target: 5'- aGCGAgcaggucaaGGACUCGAUCG-GCguccgucgGGCGg-- -3' miRNA: 3'- -CGCU---------CCUGAGCUAGCuCGa-------CUGCaug -5' |
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16396 | 3' | -53 | NC_004084.1 | + | 9235 | 0.71 | 0.604174 |
Target: 5'- aGCGAGGAgaagUUCaaGAgCGAGCUggaGACGUACa -3' miRNA: 3'- -CGCUCCU----GAG--CUaGCUCGA---CUGCAUG- -5' |
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16396 | 3' | -53 | NC_004084.1 | + | 10898 | 0.69 | 0.692263 |
Target: 5'- -aGAGGAC-CGAuUCGAGgaGGCGcUGCc -3' miRNA: 3'- cgCUCCUGaGCU-AGCUCgaCUGC-AUG- -5' |
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16396 | 3' | -53 | NC_004084.1 | + | 11945 | 1.12 | 0.001288 |
Target: 5'- aGCGAGGACUCGAUCGAGCUGACGUACu -3' miRNA: 3'- -CGCUCCUGAGCUAGCUCGACUGCAUG- -5' |
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16396 | 3' | -53 | NC_004084.1 | + | 12068 | 0.67 | 0.796359 |
Target: 5'- cGCuGGGGaACUCG-UCGAGUUGACu--- -3' miRNA: 3'- -CG-CUCC-UGAGCuAGCUCGACUGcaug -5' |
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16396 | 3' | -53 | NC_004084.1 | + | 13083 | 0.71 | 0.604174 |
Target: 5'- uCGAGGuCgUCGAUCGAGCcgGAUGUcgguGCg -3' miRNA: 3'- cGCUCCuG-AGCUAGCUCGa-CUGCA----UG- -5' |
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16396 | 3' | -53 | NC_004084.1 | + | 17280 | 0.73 | 0.486251 |
Target: 5'- aGCGucGACUCGA--GGGCUGACG-ACa -3' miRNA: 3'- -CGCucCUGAGCUagCUCGACUGCaUG- -5' |
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16396 | 3' | -53 | NC_004084.1 | + | 17350 | 0.7 | 0.670375 |
Target: 5'- gGCGAGGGCUCGAgUGAGgaGAa---- -3' miRNA: 3'- -CGCUCCUGAGCUaGCUCgaCUgcaug -5' |
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16396 | 3' | -53 | NC_004084.1 | + | 21645 | 0.66 | 0.859671 |
Target: 5'- aGCGGGGcgaacccgACUCGAacuaUCGAGCccGAC-UGCa -3' miRNA: 3'- -CGCUCC--------UGAGCU----AGCUCGa-CUGcAUG- -5' |
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16396 | 3' | -53 | NC_004084.1 | + | 23477 | 0.68 | 0.756159 |
Target: 5'- cGCGAuGGACUCGAUC-AGCgaguCGUccACa -3' miRNA: 3'- -CGCU-CCUGAGCUAGcUCGacu-GCA--UG- -5' |
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16396 | 3' | -53 | NC_004084.1 | + | 23597 | 0.66 | 0.867828 |
Target: 5'- cGCGAcgauGGACUCgcuGAUCGgauccaAGCUGugG-ACg -3' miRNA: 3'- -CGCU----CCUGAG---CUAGC------UCGACugCaUG- -5' |
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16396 | 3' | -53 | NC_004084.1 | + | 27462 | 0.69 | 0.724629 |
Target: 5'- aGCGGGaGACggUCGGcguccUCGAGCUcGACGUcgACg -3' miRNA: 3'- -CGCUC-CUG--AGCU-----AGCUCGA-CUGCA--UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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