Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16396 | 5' | -53.6 | NC_004084.1 | + | 49808 | 0.66 | 0.842648 |
Target: 5'- gUGGAccGagGACUCGGgGAGUUCUgCAa -3' miRNA: 3'- gACCU--CagUUGAGCUgCUCAAGGgGU- -5' |
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16396 | 5' | -53.6 | NC_004084.1 | + | 12067 | 0.66 | 0.806005 |
Target: 5'- gCUGGGG--AACUCGuCGAGUUgaCUCCAg -3' miRNA: 3'- -GACCUCagUUGAGCuGCUCAA--GGGGU- -5' |
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16396 | 5' | -53.6 | NC_004084.1 | + | 39738 | 0.66 | 0.806005 |
Target: 5'- -cGGGGUUggAGCgCG-CGAGUUCCUCGg -3' miRNA: 3'- gaCCUCAG--UUGaGCuGCUCAAGGGGU- -5' |
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16396 | 5' | -53.6 | NC_004084.1 | + | 5616 | 0.66 | 0.806005 |
Target: 5'- -aGGGGUCGcCUgaUGGuCGAGUUCCUCGc -3' miRNA: 3'- gaCCUCAGUuGA--GCU-GCUCAAGGGGU- -5' |
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16396 | 5' | -53.6 | NC_004084.1 | + | 57255 | 0.66 | 0.831101 |
Target: 5'- -aGGuGUCGuaucGCUUGGCGAGUUCggucugggugaucgCCCGg -3' miRNA: 3'- gaCCuCAGU----UGAGCUGCUCAAG--------------GGGU- -5' |
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16396 | 5' | -53.6 | NC_004084.1 | + | 1894 | 0.66 | 0.833798 |
Target: 5'- -cGGcGUCGucGCcggUCGGCGAGUUCgCCGg -3' miRNA: 3'- gaCCuCAGU--UG---AGCUGCUCAAGgGGU- -5' |
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16396 | 5' | -53.6 | NC_004084.1 | + | 43086 | 0.66 | 0.842648 |
Target: 5'- uUGGGGaacuccUCGAUcgCGuCGAGUUCCUCAu -3' miRNA: 3'- gACCUC------AGUUGa-GCuGCUCAAGGGGU- -5' |
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16396 | 5' | -53.6 | NC_004084.1 | + | 2089 | 0.66 | 0.842648 |
Target: 5'- -gGGAGUCgAACUCGAuCGcg-UCCUCGa -3' miRNA: 3'- gaCCUCAG-UUGAGCU-GCucaAGGGGU- -5' |
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16396 | 5' | -53.6 | NC_004084.1 | + | 32608 | 0.66 | 0.833798 |
Target: 5'- aUGGAGUCAGucuacCUCGACGucGcUCgCCAc -3' miRNA: 3'- gACCUCAGUU-----GAGCUGCu-CaAGgGGU- -5' |
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16396 | 5' | -53.6 | NC_004084.1 | + | 40583 | 0.66 | 0.795385 |
Target: 5'- -cGaGGUCAccaucgaACUCGGCGAGgagUUCCCGg -3' miRNA: 3'- gaCcUCAGU-------UGAGCUGCUCa--AGGGGU- -5' |
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16396 | 5' | -53.6 | NC_004084.1 | + | 53245 | 0.67 | 0.786541 |
Target: 5'- gCUGGGGUCAGuCaucggccucgUCGACGAcgUCCCgCAg -3' miRNA: 3'- -GACCUCAGUU-G----------AGCUGCUcaAGGG-GU- -5' |
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16396 | 5' | -53.6 | NC_004084.1 | + | 7137 | 0.67 | 0.77656 |
Target: 5'- gCUGGAucgCGGCcaaGACGAGUUCaCCCu -3' miRNA: 3'- -GACCUca-GUUGag-CUGCUCAAG-GGGu -5' |
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16396 | 5' | -53.6 | NC_004084.1 | + | 56025 | 0.67 | 0.756159 |
Target: 5'- -aGGAGaUCgAGCUCGAgGAGgUCCCg- -3' miRNA: 3'- gaCCUC-AG-UUGAGCUgCUCaAGGGgu -5' |
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16396 | 5' | -53.6 | NC_004084.1 | + | 12120 | 0.69 | 0.681343 |
Target: 5'- -cGGAGUCAACgUCGACGAcuacgaCUCCGu -3' miRNA: 3'- gaCCUCAGUUG-AGCUGCUcaa---GGGGU- -5' |
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16396 | 5' | -53.6 | NC_004084.1 | + | 22178 | 0.71 | 0.517523 |
Target: 5'- -aGGAcGUCGACccgguaGGCGAGUUCUCCGa -3' miRNA: 3'- gaCCU-CAGUUGag----CUGCUCAAGGGGU- -5' |
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16396 | 5' | -53.6 | NC_004084.1 | + | 42998 | 0.72 | 0.507005 |
Target: 5'- -aGGAacUCGACgcgaUCGAgGAGUUCCCCAa -3' miRNA: 3'- gaCCUc-AGUUG----AGCUgCUCAAGGGGU- -5' |
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16396 | 5' | -53.6 | NC_004084.1 | + | 12034 | 0.72 | 0.486251 |
Target: 5'- gUGGAaguacGUCAGCUCGAuCGAG-UCCUCGc -3' miRNA: 3'- gACCU-----CAGUUGAGCU-GCUCaAGGGGU- -5' |
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16396 | 5' | -53.6 | NC_004084.1 | + | 3161 | 0.72 | 0.486251 |
Target: 5'- -cGGAacgcacGUCGACgagcggcccgUCGACGAGUUCCUCGa -3' miRNA: 3'- gaCCU------CAGUUG----------AGCUGCUCAAGGGGU- -5' |
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16396 | 5' | -53.6 | NC_004084.1 | + | 16898 | 0.73 | 0.436251 |
Target: 5'- cCUGGAGcCAuCUCGAUGGG-UCCUCGa -3' miRNA: 3'- -GACCUCaGUuGAGCUGCUCaAGGGGU- -5' |
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16396 | 5' | -53.6 | NC_004084.1 | + | 51663 | 0.74 | 0.380367 |
Target: 5'- -aGGAGgCGAUgaUCGAgGAGUUCCCCu -3' miRNA: 3'- gaCCUCaGUUG--AGCUgCUCAAGGGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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