miRNA display CGI


Results 1 - 20 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16398 3' -56.4 NC_004084.1 + 7466 0.66 0.741684
Target:  5'- gGCGaCUCGAGCGgCGacGGCGAagGCg -3'
miRNA:   3'- gCGCaGAGCUUGCgGCa-CUGCUggCG- -5'
16398 3' -56.4 NC_004084.1 + 27476 0.66 0.741684
Target:  5'- gGCGUcCUCGAgcucgACGUCGacgaGGCGAUCGa -3'
miRNA:   3'- gCGCA-GAGCU-----UGCGGCa---CUGCUGGCg -5'
16398 3' -56.4 NC_004084.1 + 23790 0.66 0.741684
Target:  5'- cCGCGUC-Cau-CGCCGUcugggaGACGcucACCGCg -3'
miRNA:   3'- -GCGCAGaGcuuGCGGCA------CUGC---UGGCG- -5'
16398 3' -56.4 NC_004084.1 + 43648 0.66 0.741684
Target:  5'- cCGCGcCUCGu-CGggaUGACGGCCGCc -3'
miRNA:   3'- -GCGCaGAGCuuGCggcACUGCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 53324 0.66 0.731502
Target:  5'- uCGCGggCUCGGuucACGUCuucgagGugGACUGCg -3'
miRNA:   3'- -GCGCa-GAGCU---UGCGGca----CugCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 11645 0.66 0.731502
Target:  5'- cCGCGUCcgUGAACGUCuccugugGGCGGuCUGCg -3'
miRNA:   3'- -GCGCAGa-GCUUGCGGca-----CUGCU-GGCG- -5'
16398 3' -56.4 NC_004084.1 + 31432 0.66 0.721227
Target:  5'- gCGCGaugCUCG-ACGUCGacGACGaACUGCu -3'
miRNA:   3'- -GCGCa--GAGCuUGCGGCa-CUGC-UGGCG- -5'
16398 3' -56.4 NC_004084.1 + 35964 0.66 0.721227
Target:  5'- aGcCGUCgCGAGCGCCcccgaaGACGGCgGUa -3'
miRNA:   3'- gC-GCAGaGCUUGCGGca----CUGCUGgCG- -5'
16398 3' -56.4 NC_004084.1 + 515 0.66 0.710869
Target:  5'- cCGcCGUCUCGAGguCGCCGUaGACGcucUCGa -3'
miRNA:   3'- -GC-GCAGAGCUU--GCGGCA-CUGCu--GGCg -5'
16398 3' -56.4 NC_004084.1 + 21688 0.66 0.710869
Target:  5'- uGCGUUgCGAGCacaGCUGacgucGGCGACCGUc -3'
miRNA:   3'- gCGCAGaGCUUG---CGGCa----CUGCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 36135 0.66 0.710869
Target:  5'- gGUGUgcaacgUUCGAGCGUugcugaGUGACG-CCGCa -3'
miRNA:   3'- gCGCA------GAGCUUGCGg-----CACUGCuGGCG- -5'
16398 3' -56.4 NC_004084.1 + 48647 0.66 0.700439
Target:  5'- uGCGUCcUGAuuCGCCu---CGACCGCg -3'
miRNA:   3'- gCGCAGaGCUu-GCGGcacuGCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 57327 0.66 0.700439
Target:  5'- uCGCGUCaUCGccGACGCgGUcGugGACguaguCGCg -3'
miRNA:   3'- -GCGCAG-AGC--UUGCGgCA-CugCUG-----GCG- -5'
16398 3' -56.4 NC_004084.1 + 46986 0.66 0.700439
Target:  5'- --aGUCaCGAACuUCGaGACGACCGCg -3'
miRNA:   3'- gcgCAGaGCUUGcGGCaCUGCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 51071 0.67 0.689946
Target:  5'- cCGCGcCUCcugGGACGaCCG-GGCGAUCGa -3'
miRNA:   3'- -GCGCaGAG---CUUGC-GGCaCUGCUGGCg -5'
16398 3' -56.4 NC_004084.1 + 48150 0.67 0.689946
Target:  5'- uGCc-CUCGAACaUCGUGAuccggacgcCGACCGCg -3'
miRNA:   3'- gCGcaGAGCUUGcGGCACU---------GCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 58387 0.67 0.689946
Target:  5'- uGCcaUCUCGGugGCCGacACGACCu- -3'
miRNA:   3'- gCGc-AGAGCUugCGGCacUGCUGGcg -5'
16398 3' -56.4 NC_004084.1 + 51448 0.67 0.689946
Target:  5'- -aCGUUggCGAGgGCCGcGGCGGCUGUa -3'
miRNA:   3'- gcGCAGa-GCUUgCGGCaCUGCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 6975 0.67 0.689946
Target:  5'- -cCGaCUCGAGCGCCauuuCGAUCGCg -3'
miRNA:   3'- gcGCaGAGCUUGCGGcacuGCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 28402 0.67 0.685734
Target:  5'- uCGCGUCgaugCGAACGCUGacgucgucaccaGCGACCa- -3'
miRNA:   3'- -GCGCAGa---GCUUGCGGCac----------UGCUGGcg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.