Results 1 - 20 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16398 | 3' | -56.4 | NC_004084.1 | + | 12429 | 1.12 | 0.000644 |
Target: 5'- cCGCGUCUCGAACGCCGUGACGACCGCa -3' miRNA: 3'- -GCGCAGAGCUUGCGGCACUGCUGGCG- -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 22854 | 0.77 | 0.186031 |
Target: 5'- aCGUGacCUCGAACGCCGUGAacACCGUc -3' miRNA: 3'- -GCGCa-GAGCUUGCGGCACUgcUGGCG- -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 41274 | 0.77 | 0.195966 |
Target: 5'- aGCGUCgCGGGCGUCGUGuucgucccaGCuGACCGCa -3' miRNA: 3'- gCGCAGaGCUUGCGGCAC---------UG-CUGGCG- -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 53337 | 0.76 | 0.211736 |
Target: 5'- gGCccgaUCUCGu-CGCCGUcGACGACCGCc -3' miRNA: 3'- gCGc---AGAGCuuGCGGCA-CUGCUGGCG- -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 36821 | 0.75 | 0.2528 |
Target: 5'- aGCGUCgaCGAACGCCGaucGAaCGAgCCGCg -3' miRNA: 3'- gCGCAGa-GCUUGCGGCa--CU-GCU-GGCG- -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 45649 | 0.75 | 0.26568 |
Target: 5'- gGCGUCUCGGAUGCCGacaacgacgaGACGGuCgGCg -3' miRNA: 3'- gCGCAGAGCUUGCGGCa---------CUGCU-GgCG- -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 26835 | 0.75 | 0.258531 |
Target: 5'- cCGCGaccUCUCGAugGCCGUcgggaaguucgcuGugGGCCGa -3' miRNA: 3'- -GCGC---AGAGCUugCGGCA-------------CugCUGGCg -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 23940 | 0.74 | 0.300195 |
Target: 5'- cCGCGUCcaucgCGAggGCGCUGgcGGCGACUGCc -3' miRNA: 3'- -GCGCAGa----GCU--UGCGGCa-CUGCUGGCG- -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 39937 | 0.74 | 0.279086 |
Target: 5'- aGCGUgCUCGAcgGCGCC---GCGGCCGCc -3' miRNA: 3'- gCGCA-GAGCU--UGCGGcacUGCUGGCG- -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 33317 | 0.74 | 0.307501 |
Target: 5'- cCGCa-CUUGAcGCGCCGaaUGACGACCGUa -3' miRNA: 3'- -GCGcaGAGCU-UGCGGC--ACUGCUGGCG- -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 22299 | 0.73 | 0.314942 |
Target: 5'- uGCGUucgguaCUCGAGCGUCGUGACGuugUGCu -3' miRNA: 3'- gCGCA------GAGCUUGCGGCACUGCug-GCG- -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 36051 | 0.72 | 0.379313 |
Target: 5'- cCGcCGUCUUcggGGGCGCuCGcGACGGCUGCg -3' miRNA: 3'- -GC-GCAGAG---CUUGCG-GCaCUGCUGGCG- -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 49066 | 0.72 | 0.387955 |
Target: 5'- aCGCGcUCUCGGugcugcgggACGCCGUaGuCGGCgGCa -3' miRNA: 3'- -GCGC-AGAGCU---------UGCGGCA-CuGCUGgCG- -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 29540 | 0.72 | 0.361589 |
Target: 5'- gCGCGUCUaCGAgaaaaucuaccaGCGCgCGaccgacgucggccUGAUGACCGCg -3' miRNA: 3'- -GCGCAGA-GCU------------UGCG-GC-------------ACUGCUGGCG- -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 2182 | 0.72 | 0.370801 |
Target: 5'- aGuCG-CUCGAGCGCCGgGACGGCaagauGCa -3' miRNA: 3'- gC-GCaGAGCUUGCGGCaCUGCUGg----CG- -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 36987 | 0.72 | 0.387955 |
Target: 5'- gGCGUCaccgcaGAACGCCucgaggaUGGCGAUCGCa -3' miRNA: 3'- gCGCAGag----CUUGCGGc------ACUGCUGGCG- -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 47065 | 0.72 | 0.396726 |
Target: 5'- gGuCGUCUCGAAguUCGUGACuACCGCu -3' miRNA: 3'- gC-GCAGAGCUUgcGGCACUGcUGGCG- -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 54392 | 0.72 | 0.36242 |
Target: 5'- aGCGUCUCGAugucgaucacgACGUCGUcuuCGGCCaGCa -3' miRNA: 3'- gCGCAGAGCU-----------UGCGGCAcu-GCUGG-CG- -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 29082 | 0.71 | 0.451928 |
Target: 5'- gGCGUCgCGGuUGCCGUcGACGgcgagcuucACCGCg -3' miRNA: 3'- gCGCAGaGCUuGCGGCA-CUGC---------UGGCG- -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 3334 | 0.71 | 0.433053 |
Target: 5'- gCGCGUCUCGGACGggG-GAgGAgCGCg -3' miRNA: 3'- -GCGCAGAGCUUGCggCaCUgCUgGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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