miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16398 3' -56.4 NC_004084.1 + 12429 1.12 0.000644
Target:  5'- cCGCGUCUCGAACGCCGUGACGACCGCa -3'
miRNA:   3'- -GCGCAGAGCUUGCGGCACUGCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 22854 0.77 0.186031
Target:  5'- aCGUGacCUCGAACGCCGUGAacACCGUc -3'
miRNA:   3'- -GCGCa-GAGCUUGCGGCACUgcUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 41274 0.77 0.195966
Target:  5'- aGCGUCgCGGGCGUCGUGuucgucccaGCuGACCGCa -3'
miRNA:   3'- gCGCAGaGCUUGCGGCAC---------UG-CUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 53337 0.76 0.211736
Target:  5'- gGCccgaUCUCGu-CGCCGUcGACGACCGCc -3'
miRNA:   3'- gCGc---AGAGCuuGCGGCA-CUGCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 36821 0.75 0.2528
Target:  5'- aGCGUCgaCGAACGCCGaucGAaCGAgCCGCg -3'
miRNA:   3'- gCGCAGa-GCUUGCGGCa--CU-GCU-GGCG- -5'
16398 3' -56.4 NC_004084.1 + 26835 0.75 0.258531
Target:  5'- cCGCGaccUCUCGAugGCCGUcgggaaguucgcuGugGGCCGa -3'
miRNA:   3'- -GCGC---AGAGCUugCGGCA-------------CugCUGGCg -5'
16398 3' -56.4 NC_004084.1 + 45649 0.75 0.26568
Target:  5'- gGCGUCUCGGAUGCCGacaacgacgaGACGGuCgGCg -3'
miRNA:   3'- gCGCAGAGCUUGCGGCa---------CUGCU-GgCG- -5'
16398 3' -56.4 NC_004084.1 + 39937 0.74 0.279086
Target:  5'- aGCGUgCUCGAcgGCGCC---GCGGCCGCc -3'
miRNA:   3'- gCGCA-GAGCU--UGCGGcacUGCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 23940 0.74 0.300195
Target:  5'- cCGCGUCcaucgCGAggGCGCUGgcGGCGACUGCc -3'
miRNA:   3'- -GCGCAGa----GCU--UGCGGCa-CUGCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 33317 0.74 0.307501
Target:  5'- cCGCa-CUUGAcGCGCCGaaUGACGACCGUa -3'
miRNA:   3'- -GCGcaGAGCU-UGCGGC--ACUGCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 22299 0.73 0.314942
Target:  5'- uGCGUucgguaCUCGAGCGUCGUGACGuugUGCu -3'
miRNA:   3'- gCGCA------GAGCUUGCGGCACUGCug-GCG- -5'
16398 3' -56.4 NC_004084.1 + 29540 0.72 0.361589
Target:  5'- gCGCGUCUaCGAgaaaaucuaccaGCGCgCGaccgacgucggccUGAUGACCGCg -3'
miRNA:   3'- -GCGCAGA-GCU------------UGCG-GC-------------ACUGCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 54392 0.72 0.36242
Target:  5'- aGCGUCUCGAugucgaucacgACGUCGUcuuCGGCCaGCa -3'
miRNA:   3'- gCGCAGAGCU-----------UGCGGCAcu-GCUGG-CG- -5'
16398 3' -56.4 NC_004084.1 + 2182 0.72 0.370801
Target:  5'- aGuCG-CUCGAGCGCCGgGACGGCaagauGCa -3'
miRNA:   3'- gC-GCaGAGCUUGCGGCaCUGCUGg----CG- -5'
16398 3' -56.4 NC_004084.1 + 36051 0.72 0.379313
Target:  5'- cCGcCGUCUUcggGGGCGCuCGcGACGGCUGCg -3'
miRNA:   3'- -GC-GCAGAG---CUUGCG-GCaCUGCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 36987 0.72 0.387955
Target:  5'- gGCGUCaccgcaGAACGCCucgaggaUGGCGAUCGCa -3'
miRNA:   3'- gCGCAGag----CUUGCGGc------ACUGCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 49066 0.72 0.387955
Target:  5'- aCGCGcUCUCGGugcugcgggACGCCGUaGuCGGCgGCa -3'
miRNA:   3'- -GCGC-AGAGCU---------UGCGGCA-CuGCUGgCG- -5'
16398 3' -56.4 NC_004084.1 + 47065 0.72 0.396726
Target:  5'- gGuCGUCUCGAAguUCGUGACuACCGCu -3'
miRNA:   3'- gC-GCAGAGCUUgcGGCACUGcUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 45720 0.71 0.405623
Target:  5'- gGCaUC-CGAgACGCCGUcGACGACCGa -3'
miRNA:   3'- gCGcAGaGCU-UGCGGCA-CUGCUGGCg -5'
16398 3' -56.4 NC_004084.1 + 3334 0.71 0.433053
Target:  5'- gCGCGUCUCGGACGggG-GAgGAgCGCg -3'
miRNA:   3'- -GCGCAGAGCUUGCggCaCUgCUgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.