miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16398 3' -56.4 NC_004084.1 + 3334 0.71 0.433053
Target:  5'- gCGCGUCUCGGACGggG-GAgGAgCGCg -3'
miRNA:   3'- -GCGCAGAGCUUGCggCaCUgCUgGCG- -5'
16398 3' -56.4 NC_004084.1 + 7627 0.71 0.451928
Target:  5'- gGCGuucuUCUCG-AUGCCGUccugGAUGGCUGCa -3'
miRNA:   3'- gCGC----AGAGCuUGCGGCA----CUGCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 29082 0.71 0.451928
Target:  5'- gGCGUCgCGGuUGCCGUcGACGgcgagcuucACCGCg -3'
miRNA:   3'- gCGCAGaGCUuGCGGCA-CUGC---------UGGCG- -5'
16398 3' -56.4 NC_004084.1 + 43346 0.7 0.461532
Target:  5'- aCG-GUCUCGAACGCCGaGuCGAacaucaCGCu -3'
miRNA:   3'- -GCgCAGAGCUUGCGGCaCuGCUg-----GCG- -5'
16398 3' -56.4 NC_004084.1 + 41537 0.7 0.461532
Target:  5'- uCGgGUCuUCGAGCGCCuG-GACGACuCGg -3'
miRNA:   3'- -GCgCAG-AGCUUGCGG-CaCUGCUG-GCg -5'
16398 3' -56.4 NC_004084.1 + 29343 0.7 0.461532
Target:  5'- aCGCGcUCUCGAacucGCGCUGgucGACGcCCGg -3'
miRNA:   3'- -GCGC-AGAGCU----UGCGGCa--CUGCuGGCg -5'
16398 3' -56.4 NC_004084.1 + 28981 0.7 0.471244
Target:  5'- cCGCGUUcgCGGugaagcuCGCCGUcGACGgcaACCGCg -3'
miRNA:   3'- -GCGCAGa-GCUu------GCGGCA-CUGC---UGGCG- -5'
16398 3' -56.4 NC_004084.1 + 52147 0.7 0.471244
Target:  5'- uGCGUCgugaucaUGGACGCCGaccacgucGACGaACCGCu -3'
miRNA:   3'- gCGCAGa------GCUUGCGGCa-------CUGC-UGGCG- -5'
16398 3' -56.4 NC_004084.1 + 20101 0.7 0.478103
Target:  5'- uCGuCGUcCUCGAGCGCCGaUcggauuccccguucGAUGAUCGCu -3'
miRNA:   3'- -GC-GCA-GAGCUUGCGGC-A--------------CUGCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 10273 0.7 0.489974
Target:  5'- aGCcaCUCGAGCGggaguugcucaCCGUGACGacgaccgGCCGCa -3'
miRNA:   3'- gCGcaGAGCUUGC-----------GGCACUGC-------UGGCG- -5'
16398 3' -56.4 NC_004084.1 + 22070 0.7 0.490969
Target:  5'- gCGCGUCgUCGAcguACGCCGUcuGC-ACCGUg -3'
miRNA:   3'- -GCGCAG-AGCU---UGCGGCAc-UGcUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 47197 0.7 0.500975
Target:  5'- gGCGUCgcacCGGAUGCagGUGcCGACCGg -3'
miRNA:   3'- gCGCAGa---GCUUGCGg-CACuGCUGGCg -5'
16398 3' -56.4 NC_004084.1 + 28868 0.7 0.500975
Target:  5'- gGCuGUCggcucCGGACGUC--GACGACCGCg -3'
miRNA:   3'- gCG-CAGa----GCUUGCGGcaCUGCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 5971 0.7 0.511069
Target:  5'- gGCGUCa-GGACGauccCCGUGGCGGuCUGCu -3'
miRNA:   3'- gCGCAGagCUUGC----GGCACUGCU-GGCG- -5'
16398 3' -56.4 NC_004084.1 + 57085 0.69 0.520226
Target:  5'- gGCGUCgccauucUCGGcguCGCCGUccuCGGCCGCc -3'
miRNA:   3'- gCGCAG-------AGCUu--GCGGCAcu-GCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 34923 0.69 0.521247
Target:  5'- uGCGUCUCGuacgacGACGUCGUG-Cu-CCGCc -3'
miRNA:   3'- gCGCAGAGC------UUGCGGCACuGcuGGCG- -5'
16398 3' -56.4 NC_004084.1 + 22245 0.69 0.531503
Target:  5'- uCGaCGUcCUCGAguGCGCCGaGGCGcUCGCg -3'
miRNA:   3'- -GC-GCA-GAGCU--UGCGGCaCUGCuGGCG- -5'
16398 3' -56.4 NC_004084.1 + 41463 0.69 0.541831
Target:  5'- gGCG-CUCGAagaccccgACGUCGcGACGcCCGCc -3'
miRNA:   3'- gCGCaGAGCU--------UGCGGCaCUGCuGGCG- -5'
16398 3' -56.4 NC_004084.1 + 35597 0.69 0.551183
Target:  5'- gGCGgCUCGAACGgaucgauCCGUGACGcCCu- -3'
miRNA:   3'- gCGCaGAGCUUGC-------GGCACUGCuGGcg -5'
16398 3' -56.4 NC_004084.1 + 19171 0.69 0.552226
Target:  5'- cCGCGgugcugaUCG-ACGUCGacguaGACGGCCGCg -3'
miRNA:   3'- -GCGCag-----AGCuUGCGGCa----CUGCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.