Results 1 - 20 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16398 | 3' | -56.4 | NC_004084.1 | + | 7466 | 0.66 | 0.741684 |
Target: 5'- gGCGaCUCGAGCGgCGacGGCGAagGCg -3' miRNA: 3'- gCGCaGAGCUUGCgGCa-CUGCUggCG- -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 27476 | 0.66 | 0.741684 |
Target: 5'- gGCGUcCUCGAgcucgACGUCGacgaGGCGAUCGa -3' miRNA: 3'- gCGCA-GAGCU-----UGCGGCa---CUGCUGGCg -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 23790 | 0.66 | 0.741684 |
Target: 5'- cCGCGUC-Cau-CGCCGUcugggaGACGcucACCGCg -3' miRNA: 3'- -GCGCAGaGcuuGCGGCA------CUGC---UGGCG- -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 43648 | 0.66 | 0.741684 |
Target: 5'- cCGCGcCUCGu-CGggaUGACGGCCGCc -3' miRNA: 3'- -GCGCaGAGCuuGCggcACUGCUGGCG- -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 53324 | 0.66 | 0.731502 |
Target: 5'- uCGCGggCUCGGuucACGUCuucgagGugGACUGCg -3' miRNA: 3'- -GCGCa-GAGCU---UGCGGca----CugCUGGCG- -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 11645 | 0.66 | 0.731502 |
Target: 5'- cCGCGUCcgUGAACGUCuccugugGGCGGuCUGCg -3' miRNA: 3'- -GCGCAGa-GCUUGCGGca-----CUGCU-GGCG- -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 31432 | 0.66 | 0.721227 |
Target: 5'- gCGCGaugCUCG-ACGUCGacGACGaACUGCu -3' miRNA: 3'- -GCGCa--GAGCuUGCGGCa-CUGC-UGGCG- -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 35964 | 0.66 | 0.721227 |
Target: 5'- aGcCGUCgCGAGCGCCcccgaaGACGGCgGUa -3' miRNA: 3'- gC-GCAGaGCUUGCGGca----CUGCUGgCG- -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 515 | 0.66 | 0.710869 |
Target: 5'- cCGcCGUCUCGAGguCGCCGUaGACGcucUCGa -3' miRNA: 3'- -GC-GCAGAGCUU--GCGGCA-CUGCu--GGCg -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 21688 | 0.66 | 0.710869 |
Target: 5'- uGCGUUgCGAGCacaGCUGacgucGGCGACCGUc -3' miRNA: 3'- gCGCAGaGCUUG---CGGCa----CUGCUGGCG- -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 36135 | 0.66 | 0.710869 |
Target: 5'- gGUGUgcaacgUUCGAGCGUugcugaGUGACG-CCGCa -3' miRNA: 3'- gCGCA------GAGCUUGCGg-----CACUGCuGGCG- -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 48647 | 0.66 | 0.700439 |
Target: 5'- uGCGUCcUGAuuCGCCu---CGACCGCg -3' miRNA: 3'- gCGCAGaGCUu-GCGGcacuGCUGGCG- -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 57327 | 0.66 | 0.700439 |
Target: 5'- uCGCGUCaUCGccGACGCgGUcGugGACguaguCGCg -3' miRNA: 3'- -GCGCAG-AGC--UUGCGgCA-CugCUG-----GCG- -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 46986 | 0.66 | 0.700439 |
Target: 5'- --aGUCaCGAACuUCGaGACGACCGCg -3' miRNA: 3'- gcgCAGaGCUUGcGGCaCUGCUGGCG- -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 51071 | 0.67 | 0.689946 |
Target: 5'- cCGCGcCUCcugGGACGaCCG-GGCGAUCGa -3' miRNA: 3'- -GCGCaGAG---CUUGC-GGCaCUGCUGGCg -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 48150 | 0.67 | 0.689946 |
Target: 5'- uGCc-CUCGAACaUCGUGAuccggacgcCGACCGCg -3' miRNA: 3'- gCGcaGAGCUUGcGGCACU---------GCUGGCG- -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 58387 | 0.67 | 0.689946 |
Target: 5'- uGCcaUCUCGGugGCCGacACGACCu- -3' miRNA: 3'- gCGc-AGAGCUugCGGCacUGCUGGcg -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 51448 | 0.67 | 0.689946 |
Target: 5'- -aCGUUggCGAGgGCCGcGGCGGCUGUa -3' miRNA: 3'- gcGCAGa-GCUUgCGGCaCUGCUGGCG- -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 6975 | 0.67 | 0.689946 |
Target: 5'- -cCGaCUCGAGCGCCauuuCGAUCGCg -3' miRNA: 3'- gcGCaGAGCUUGCGGcacuGCUGGCG- -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 28402 | 0.67 | 0.685734 |
Target: 5'- uCGCGUCgaugCGAACGCUGacgucgucaccaGCGACCa- -3' miRNA: 3'- -GCGCAGa---GCUUGCGGCac----------UGCUGGcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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