miRNA display CGI


Results 21 - 40 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16398 3' -56.4 NC_004084.1 + 56545 0.67 0.683625
Target:  5'- aGCGUCaCGGaagaccgagagcGCGCCGUcgagaucgucguuccGACGguGCCGCu -3'
miRNA:   3'- gCGCAGaGCU------------UGCGGCA---------------CUGC--UGGCG- -5'
16398 3' -56.4 NC_004084.1 + 58397 0.67 0.683625
Target:  5'- uGcCGUCUCGAugGUgGaUGugGAcggaggagaccucguCCGCa -3'
miRNA:   3'- gC-GCAGAGCUugCGgC-ACugCU---------------GGCG- -5'
16398 3' -56.4 NC_004084.1 + 52464 0.67 0.679401
Target:  5'- aCGC-UCagUCGAugGCCGaGGCGAagCGCg -3'
miRNA:   3'- -GCGcAG--AGCUugCGGCaCUGCUg-GCG- -5'
16398 3' -56.4 NC_004084.1 + 10807 0.67 0.679401
Target:  5'- aGCcUCUgGAGCGCCGaacucGugGugcuCCGCg -3'
miRNA:   3'- gCGcAGAgCUUGCGGCa----CugCu---GGCG- -5'
16398 3' -56.4 NC_004084.1 + 27007 0.67 0.679401
Target:  5'- cCGCGUCgucugCGAcuuCGCCGauaucGGCGuaguCCGCc -3'
miRNA:   3'- -GCGCAGa----GCUu--GCGGCa----CUGCu---GGCG- -5'
16398 3' -56.4 NC_004084.1 + 37247 0.67 0.668814
Target:  5'- cCGCGUCcCG-GCGCuCGUcGAgGACuCGCu -3'
miRNA:   3'- -GCGCAGaGCuUGCG-GCA-CUgCUG-GCG- -5'
16398 3' -56.4 NC_004084.1 + 26606 0.67 0.658195
Target:  5'- cCGCGUC-C-AugGCCGUcucgGACGuacuuACCGCg -3'
miRNA:   3'- -GCGCAGaGcUugCGGCA----CUGC-----UGGCG- -5'
16398 3' -56.4 NC_004084.1 + 26546 0.67 0.658195
Target:  5'- cCGCGUC-C-AugGCCGUcucgGACGuacuuACCGCg -3'
miRNA:   3'- -GCGCAGaGcUugCGGCA----CUGC-----UGGCG- -5'
16398 3' -56.4 NC_004084.1 + 18932 0.67 0.658195
Target:  5'- uGCGUaCUCGAGCaGCuCGUcGACGAggucCCGg -3'
miRNA:   3'- gCGCA-GAGCUUG-CG-GCA-CUGCU----GGCg -5'
16398 3' -56.4 NC_004084.1 + 8249 0.67 0.658195
Target:  5'- uGCGUcCUCGu-CGCCGuUGGCGGCg-- -3'
miRNA:   3'- gCGCA-GAGCuuGCGGC-ACUGCUGgcg -5'
16398 3' -56.4 NC_004084.1 + 29283 0.67 0.658195
Target:  5'- aCGCGcUCUgGAacaucgACGCCGagcagGGCGAguuCCGCu -3'
miRNA:   3'- -GCGC-AGAgCU------UGCGGCa----CUGCU---GGCG- -5'
16398 3' -56.4 NC_004084.1 + 35341 0.67 0.658195
Target:  5'- cCGaCGUCcaccUCGucgcguCGCCGgcGACGAUCGCg -3'
miRNA:   3'- -GC-GCAG----AGCuu----GCGGCa-CUGCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 50071 0.67 0.658195
Target:  5'- gGCGauugcUCUCGAaaACGCCGgcugGAUcauCCGCg -3'
miRNA:   3'- gCGC-----AGAGCU--UGCGGCa---CUGcu-GGCG- -5'
16398 3' -56.4 NC_004084.1 + 56467 0.67 0.657132
Target:  5'- aGCGUCUcCGAgaggucgaugucgAUGCCGUacgGugGAuCCGUg -3'
miRNA:   3'- gCGCAGA-GCU-------------UGCGGCA---CugCU-GGCG- -5'
16398 3' -56.4 NC_004084.1 + 22574 0.67 0.655004
Target:  5'- aCGCGUUcaCGAGCauguccccggcgucGCCGgggucGGCGGCCGUg -3'
miRNA:   3'- -GCGCAGa-GCUUG--------------CGGCa----CUGCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 12878 0.67 0.647553
Target:  5'- aGCGUgUCG-ACGCCG-GACGugUc- -3'
miRNA:   3'- gCGCAgAGCuUGCGGCaCUGCugGcg -5'
16398 3' -56.4 NC_004084.1 + 53137 0.67 0.636898
Target:  5'- gGaCGUCUCGuuuacugcgGACGCCGUGcCaGCCGg -3'
miRNA:   3'- gC-GCAGAGC---------UUGCGGCACuGcUGGCg -5'
16398 3' -56.4 NC_004084.1 + 42072 0.67 0.636898
Target:  5'- uCGCGUCagCGAACGCUGccgGAucCGGCCc- -3'
miRNA:   3'- -GCGCAGa-GCUUGCGGCa--CU--GCUGGcg -5'
16398 3' -56.4 NC_004084.1 + 20044 0.68 0.615584
Target:  5'- uCGCGUCUCGucagucgauGcugucgauaccgacgACGCCGgagcgaaccggaaGACGACCGUc -3'
miRNA:   3'- -GCGCAGAGC---------U---------------UGCGGCa------------CUGCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 46685 0.68 0.604943
Target:  5'- cCGCGaUUCGAGCacgucGCCGgcGACGucuACCGCg -3'
miRNA:   3'- -GCGCaGAGCUUG-----CGGCa-CUGC---UGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.