miRNA display CGI


Results 41 - 60 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16398 3' -56.4 NC_004084.1 + 43643 0.68 0.604943
Target:  5'- gGCGUCUCGAuAgGCaCGaacgGGCGggccuACCGCg -3'
miRNA:   3'- gCGCAGAGCU-UgCG-GCa---CUGC-----UGGCG- -5'
16398 3' -56.4 NC_004084.1 + 39473 0.68 0.604943
Target:  5'- gGCGUgUCGGggauguagACGCaCGUGAaGACgGCg -3'
miRNA:   3'- gCGCAgAGCU--------UGCG-GCACUgCUGgCG- -5'
16398 3' -56.4 NC_004084.1 + 56862 0.68 0.600693
Target:  5'- uCGCGggcuccggCUCGAcgGCCGUGccucgguccagacCGACCGCg -3'
miRNA:   3'- -GCGCa-------GAGCUugCGGCACu------------GCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 51247 0.68 0.594324
Target:  5'- gCGCGUgCUCG-GCGaCCGUcuCGAUCGCc -3'
miRNA:   3'- -GCGCA-GAGCuUGC-GGCAcuGCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 23706 0.68 0.583736
Target:  5'- aGCGUCUCccagacggcgauGGACGCgGUGAgCGACUc- -3'
miRNA:   3'- gCGCAGAG------------CUUGCGgCACU-GCUGGcg -5'
16398 3' -56.4 NC_004084.1 + 35113 0.68 0.583736
Target:  5'- aCGCGcUCUCGGucacGCGCuCGcucgggacUGGuCGGCCGCu -3'
miRNA:   3'- -GCGC-AGAGCU----UGCG-GC--------ACU-GCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 17544 0.68 0.583736
Target:  5'- gGCGUCaCGAGCGUCG--ACGACaGCg -3'
miRNA:   3'- gCGCAGaGCUUGCGGCacUGCUGgCG- -5'
16398 3' -56.4 NC_004084.1 + 38370 0.68 0.583736
Target:  5'- aCGCcggaUCGAGCGCgGgaaGGCGACCGa -3'
miRNA:   3'- -GCGcag-AGCUUGCGgCa--CUGCUGGCg -5'
16398 3' -56.4 NC_004084.1 + 35018 0.68 0.583736
Target:  5'- aGCG-CaCGAACGcCCGUGACGagaugGCCGg -3'
miRNA:   3'- gCGCaGaGCUUGC-GGCACUGC-----UGGCg -5'
16398 3' -56.4 NC_004084.1 + 40549 0.68 0.583736
Target:  5'- uCGCG-UUCGAG-GCCGUGugGACguCGUc -3'
miRNA:   3'- -GCGCaGAGCUUgCGGCACugCUG--GCG- -5'
16398 3' -56.4 NC_004084.1 + 47457 0.68 0.583736
Target:  5'- uCGcCGUCgacgacgCGGACGaaGgGGCGGCCGCc -3'
miRNA:   3'- -GC-GCAGa------GCUUGCggCaCUGCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 27258 0.68 0.572132
Target:  5'- cCGCG-CUCGAcgagaucucGCGguccgaaCCGcUGACGAUCGCg -3'
miRNA:   3'- -GCGCaGAGCU---------UGC-------GGC-ACUGCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 47580 0.69 0.562679
Target:  5'- gGaCGUUcgCGAGCGCgGUGGCGACUc- -3'
miRNA:   3'- gC-GCAGa-GCUUGCGgCACUGCUGGcg -5'
16398 3' -56.4 NC_004084.1 + 19171 0.69 0.552226
Target:  5'- cCGCGgugcugaUCG-ACGUCGacguaGACGGCCGCg -3'
miRNA:   3'- -GCGCag-----AGCuUGCGGCa----CUGCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 35597 0.69 0.551183
Target:  5'- gGCGgCUCGAACGgaucgauCCGUGACGcCCu- -3'
miRNA:   3'- gCGCaGAGCUUGC-------GGCACUGCuGGcg -5'
16398 3' -56.4 NC_004084.1 + 41463 0.69 0.541831
Target:  5'- gGCG-CUCGAagaccccgACGUCGcGACGcCCGCc -3'
miRNA:   3'- gCGCaGAGCU--------UGCGGCaCUGCuGGCG- -5'
16398 3' -56.4 NC_004084.1 + 22245 0.69 0.531503
Target:  5'- uCGaCGUcCUCGAguGCGCCGaGGCGcUCGCg -3'
miRNA:   3'- -GC-GCA-GAGCU--UGCGGCaCUGCuGGCG- -5'
16398 3' -56.4 NC_004084.1 + 34923 0.69 0.521247
Target:  5'- uGCGUCUCGuacgacGACGUCGUG-Cu-CCGCc -3'
miRNA:   3'- gCGCAGAGC------UUGCGGCACuGcuGGCG- -5'
16398 3' -56.4 NC_004084.1 + 57085 0.69 0.520226
Target:  5'- gGCGUCgccauucUCGGcguCGCCGUccuCGGCCGCc -3'
miRNA:   3'- gCGCAG-------AGCUu--GCGGCAcu-GCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 5971 0.7 0.511069
Target:  5'- gGCGUCa-GGACGauccCCGUGGCGGuCUGCu -3'
miRNA:   3'- gCGCAGagCUUGC----GGCACUGCU-GGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.