miRNA display CGI


Results 1 - 20 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16398 3' -56.4 NC_004084.1 + 515 0.66 0.710869
Target:  5'- cCGcCGUCUCGAGguCGCCGUaGACGcucUCGa -3'
miRNA:   3'- -GC-GCAGAGCUU--GCGGCA-CUGCu--GGCg -5'
16398 3' -56.4 NC_004084.1 + 2182 0.72 0.370801
Target:  5'- aGuCG-CUCGAGCGCCGgGACGGCaagauGCa -3'
miRNA:   3'- gC-GCaGAGCUUGCGGCaCUGCUGg----CG- -5'
16398 3' -56.4 NC_004084.1 + 3334 0.71 0.433053
Target:  5'- gCGCGUCUCGGACGggG-GAgGAgCGCg -3'
miRNA:   3'- -GCGCAGAGCUUGCggCaCUgCUgGCG- -5'
16398 3' -56.4 NC_004084.1 + 5971 0.7 0.511069
Target:  5'- gGCGUCa-GGACGauccCCGUGGCGGuCUGCu -3'
miRNA:   3'- gCGCAGagCUUGC----GGCACUGCU-GGCG- -5'
16398 3' -56.4 NC_004084.1 + 6975 0.67 0.689946
Target:  5'- -cCGaCUCGAGCGCCauuuCGAUCGCg -3'
miRNA:   3'- gcGCaGAGCUUGCGGcacuGCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 7466 0.66 0.741684
Target:  5'- gGCGaCUCGAGCGgCGacGGCGAagGCg -3'
miRNA:   3'- gCGCaGAGCUUGCgGCa-CUGCUggCG- -5'
16398 3' -56.4 NC_004084.1 + 7627 0.71 0.451928
Target:  5'- gGCGuucuUCUCG-AUGCCGUccugGAUGGCUGCa -3'
miRNA:   3'- gCGC----AGAGCuUGCGGCA----CUGCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 8249 0.67 0.658195
Target:  5'- uGCGUcCUCGu-CGCCGuUGGCGGCg-- -3'
miRNA:   3'- gCGCA-GAGCuuGCGGC-ACUGCUGgcg -5'
16398 3' -56.4 NC_004084.1 + 10273 0.7 0.489974
Target:  5'- aGCcaCUCGAGCGggaguugcucaCCGUGACGacgaccgGCCGCa -3'
miRNA:   3'- gCGcaGAGCUUGC-----------GGCACUGC-------UGGCG- -5'
16398 3' -56.4 NC_004084.1 + 10807 0.67 0.679401
Target:  5'- aGCcUCUgGAGCGCCGaacucGugGugcuCCGCg -3'
miRNA:   3'- gCGcAGAgCUUGCGGCa----CugCu---GGCG- -5'
16398 3' -56.4 NC_004084.1 + 11645 0.66 0.731502
Target:  5'- cCGCGUCcgUGAACGUCuccugugGGCGGuCUGCg -3'
miRNA:   3'- -GCGCAGa-GCUUGCGGca-----CUGCU-GGCG- -5'
16398 3' -56.4 NC_004084.1 + 12429 1.12 0.000644
Target:  5'- cCGCGUCUCGAACGCCGUGACGACCGCa -3'
miRNA:   3'- -GCGCAGAGCUUGCGGCACUGCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 12878 0.67 0.647553
Target:  5'- aGCGUgUCG-ACGCCG-GACGugUc- -3'
miRNA:   3'- gCGCAgAGCuUGCGGCaCUGCugGcg -5'
16398 3' -56.4 NC_004084.1 + 17544 0.68 0.583736
Target:  5'- gGCGUCaCGAGCGUCG--ACGACaGCg -3'
miRNA:   3'- gCGCAGaGCUUGCGGCacUGCUGgCG- -5'
16398 3' -56.4 NC_004084.1 + 18932 0.67 0.658195
Target:  5'- uGCGUaCUCGAGCaGCuCGUcGACGAggucCCGg -3'
miRNA:   3'- gCGCA-GAGCUUG-CG-GCA-CUGCU----GGCg -5'
16398 3' -56.4 NC_004084.1 + 19171 0.69 0.552226
Target:  5'- cCGCGgugcugaUCG-ACGUCGacguaGACGGCCGCg -3'
miRNA:   3'- -GCGCag-----AGCuUGCGGCa----CUGCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 20044 0.68 0.615584
Target:  5'- uCGCGUCUCGucagucgauGcugucgauaccgacgACGCCGgagcgaaccggaaGACGACCGUc -3'
miRNA:   3'- -GCGCAGAGC---------U---------------UGCGGCa------------CUGCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 20101 0.7 0.478103
Target:  5'- uCGuCGUcCUCGAGCGCCGaUcggauuccccguucGAUGAUCGCu -3'
miRNA:   3'- -GC-GCA-GAGCUUGCGGC-A--------------CUGCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 21688 0.66 0.710869
Target:  5'- uGCGUUgCGAGCacaGCUGacgucGGCGACCGUc -3'
miRNA:   3'- gCGCAGaGCUUG---CGGCa----CUGCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 22070 0.7 0.490969
Target:  5'- gCGCGUCgUCGAcguACGCCGUcuGC-ACCGUg -3'
miRNA:   3'- -GCGCAG-AGCU---UGCGGCAc-UGcUGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.