miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16398 3' -56.4 NC_004084.1 + 22245 0.69 0.531503
Target:  5'- uCGaCGUcCUCGAguGCGCCGaGGCGcUCGCg -3'
miRNA:   3'- -GC-GCA-GAGCU--UGCGGCaCUGCuGGCG- -5'
16398 3' -56.4 NC_004084.1 + 22299 0.73 0.314942
Target:  5'- uGCGUucgguaCUCGAGCGUCGUGACGuugUGCu -3'
miRNA:   3'- gCGCA------GAGCUUGCGGCACUGCug-GCG- -5'
16398 3' -56.4 NC_004084.1 + 22574 0.67 0.655004
Target:  5'- aCGCGUUcaCGAGCauguccccggcgucGCCGgggucGGCGGCCGUg -3'
miRNA:   3'- -GCGCAGa-GCUUG--------------CGGCa----CUGCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 22854 0.77 0.186031
Target:  5'- aCGUGacCUCGAACGCCGUGAacACCGUc -3'
miRNA:   3'- -GCGCa-GAGCUUGCGGCACUgcUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 23706 0.68 0.583736
Target:  5'- aGCGUCUCccagacggcgauGGACGCgGUGAgCGACUc- -3'
miRNA:   3'- gCGCAGAG------------CUUGCGgCACU-GCUGGcg -5'
16398 3' -56.4 NC_004084.1 + 23790 0.66 0.741684
Target:  5'- cCGCGUC-Cau-CGCCGUcugggaGACGcucACCGCg -3'
miRNA:   3'- -GCGCAGaGcuuGCGGCA------CUGC---UGGCG- -5'
16398 3' -56.4 NC_004084.1 + 23940 0.74 0.300195
Target:  5'- cCGCGUCcaucgCGAggGCGCUGgcGGCGACUGCc -3'
miRNA:   3'- -GCGCAGa----GCU--UGCGGCa-CUGCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 26546 0.67 0.658195
Target:  5'- cCGCGUC-C-AugGCCGUcucgGACGuacuuACCGCg -3'
miRNA:   3'- -GCGCAGaGcUugCGGCA----CUGC-----UGGCG- -5'
16398 3' -56.4 NC_004084.1 + 26606 0.67 0.658195
Target:  5'- cCGCGUC-C-AugGCCGUcucgGACGuacuuACCGCg -3'
miRNA:   3'- -GCGCAGaGcUugCGGCA----CUGC-----UGGCG- -5'
16398 3' -56.4 NC_004084.1 + 26835 0.75 0.258531
Target:  5'- cCGCGaccUCUCGAugGCCGUcgggaaguucgcuGugGGCCGa -3'
miRNA:   3'- -GCGC---AGAGCUugCGGCA-------------CugCUGGCg -5'
16398 3' -56.4 NC_004084.1 + 27007 0.67 0.679401
Target:  5'- cCGCGUCgucugCGAcuuCGCCGauaucGGCGuaguCCGCc -3'
miRNA:   3'- -GCGCAGa----GCUu--GCGGCa----CUGCu---GGCG- -5'
16398 3' -56.4 NC_004084.1 + 27258 0.68 0.572132
Target:  5'- cCGCG-CUCGAcgagaucucGCGguccgaaCCGcUGACGAUCGCg -3'
miRNA:   3'- -GCGCaGAGCU---------UGC-------GGC-ACUGCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 27476 0.66 0.741684
Target:  5'- gGCGUcCUCGAgcucgACGUCGacgaGGCGAUCGa -3'
miRNA:   3'- gCGCA-GAGCU-----UGCGGCa---CUGCUGGCg -5'
16398 3' -56.4 NC_004084.1 + 28402 0.67 0.685734
Target:  5'- uCGCGUCgaugCGAACGCUGacgucgucaccaGCGACCa- -3'
miRNA:   3'- -GCGCAGa---GCUUGCGGCac----------UGCUGGcg -5'
16398 3' -56.4 NC_004084.1 + 28868 0.7 0.500975
Target:  5'- gGCuGUCggcucCGGACGUC--GACGACCGCg -3'
miRNA:   3'- gCG-CAGa----GCUUGCGGcaCUGCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 28981 0.7 0.471244
Target:  5'- cCGCGUUcgCGGugaagcuCGCCGUcGACGgcaACCGCg -3'
miRNA:   3'- -GCGCAGa-GCUu------GCGGCA-CUGC---UGGCG- -5'
16398 3' -56.4 NC_004084.1 + 29082 0.71 0.451928
Target:  5'- gGCGUCgCGGuUGCCGUcGACGgcgagcuucACCGCg -3'
miRNA:   3'- gCGCAGaGCUuGCGGCA-CUGC---------UGGCG- -5'
16398 3' -56.4 NC_004084.1 + 29283 0.67 0.658195
Target:  5'- aCGCGcUCUgGAacaucgACGCCGagcagGGCGAguuCCGCu -3'
miRNA:   3'- -GCGC-AGAgCU------UGCGGCa----CUGCU---GGCG- -5'
16398 3' -56.4 NC_004084.1 + 29343 0.7 0.461532
Target:  5'- aCGCGcUCUCGAacucGCGCUGgucGACGcCCGg -3'
miRNA:   3'- -GCGC-AGAGCU----UGCGGCa--CUGCuGGCg -5'
16398 3' -56.4 NC_004084.1 + 29540 0.72 0.361589
Target:  5'- gCGCGUCUaCGAgaaaaucuaccaGCGCgCGaccgacgucggccUGAUGACCGCg -3'
miRNA:   3'- -GCGCAGA-GCU------------UGCG-GC-------------ACUGCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.