miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16398 3' -56.4 NC_004084.1 + 58397 0.67 0.683625
Target:  5'- uGcCGUCUCGAugGUgGaUGugGAcggaggagaccucguCCGCa -3'
miRNA:   3'- gC-GCAGAGCUugCGgC-ACugCU---------------GGCG- -5'
16398 3' -56.4 NC_004084.1 + 58387 0.67 0.689946
Target:  5'- uGCcaUCUCGGugGCCGacACGACCu- -3'
miRNA:   3'- gCGc-AGAGCUugCGGCacUGCUGGcg -5'
16398 3' -56.4 NC_004084.1 + 57327 0.66 0.700439
Target:  5'- uCGCGUCaUCGccGACGCgGUcGugGACguaguCGCg -3'
miRNA:   3'- -GCGCAG-AGC--UUGCGgCA-CugCUG-----GCG- -5'
16398 3' -56.4 NC_004084.1 + 57085 0.69 0.520226
Target:  5'- gGCGUCgccauucUCGGcguCGCCGUccuCGGCCGCc -3'
miRNA:   3'- gCGCAG-------AGCUu--GCGGCAcu-GCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 56862 0.68 0.600693
Target:  5'- uCGCGggcuccggCUCGAcgGCCGUGccucgguccagacCGACCGCg -3'
miRNA:   3'- -GCGCa-------GAGCUugCGGCACu------------GCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 56545 0.67 0.683625
Target:  5'- aGCGUCaCGGaagaccgagagcGCGCCGUcgagaucgucguuccGACGguGCCGCu -3'
miRNA:   3'- gCGCAGaGCU------------UGCGGCA---------------CUGC--UGGCG- -5'
16398 3' -56.4 NC_004084.1 + 56467 0.67 0.657132
Target:  5'- aGCGUCUcCGAgaggucgaugucgAUGCCGUacgGugGAuCCGUg -3'
miRNA:   3'- gCGCAGA-GCU-------------UGCGGCA---CugCU-GGCG- -5'
16398 3' -56.4 NC_004084.1 + 56463 0.71 0.433053
Target:  5'- gCGCGcUCUCGGucuuCCGUGACG-CUGCg -3'
miRNA:   3'- -GCGC-AGAGCUugc-GGCACUGCuGGCG- -5'
16398 3' -56.4 NC_004084.1 + 54392 0.72 0.36242
Target:  5'- aGCGUCUCGAugucgaucacgACGUCGUcuuCGGCCaGCa -3'
miRNA:   3'- gCGCAGAGCU-----------UGCGGCAcu-GCUGG-CG- -5'
16398 3' -56.4 NC_004084.1 + 53337 0.76 0.211736
Target:  5'- gGCccgaUCUCGu-CGCCGUcGACGACCGCc -3'
miRNA:   3'- gCGc---AGAGCuuGCGGCA-CUGCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 53324 0.66 0.731502
Target:  5'- uCGCGggCUCGGuucACGUCuucgagGugGACUGCg -3'
miRNA:   3'- -GCGCa-GAGCU---UGCGGca----CugCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 53137 0.67 0.636898
Target:  5'- gGaCGUCUCGuuuacugcgGACGCCGUGcCaGCCGg -3'
miRNA:   3'- gC-GCAGAGC---------UUGCGGCACuGcUGGCg -5'
16398 3' -56.4 NC_004084.1 + 52464 0.67 0.679401
Target:  5'- aCGC-UCagUCGAugGCCGaGGCGAagCGCg -3'
miRNA:   3'- -GCGcAG--AGCUugCGGCaCUGCUg-GCG- -5'
16398 3' -56.4 NC_004084.1 + 52147 0.7 0.471244
Target:  5'- uGCGUCgugaucaUGGACGCCGaccacgucGACGaACCGCu -3'
miRNA:   3'- gCGCAGa------GCUUGCGGCa-------CUGC-UGGCG- -5'
16398 3' -56.4 NC_004084.1 + 51448 0.67 0.689946
Target:  5'- -aCGUUggCGAGgGCCGcGGCGGCUGUa -3'
miRNA:   3'- gcGCAGa-GCUUgCGGCaCUGCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 51247 0.68 0.594324
Target:  5'- gCGCGUgCUCG-GCGaCCGUcuCGAUCGCc -3'
miRNA:   3'- -GCGCA-GAGCuUGC-GGCAcuGCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 51071 0.67 0.689946
Target:  5'- cCGCGcCUCcugGGACGaCCG-GGCGAUCGa -3'
miRNA:   3'- -GCGCaGAG---CUUGC-GGCaCUGCUGGCg -5'
16398 3' -56.4 NC_004084.1 + 50071 0.67 0.658195
Target:  5'- gGCGauugcUCUCGAaaACGCCGgcugGAUcauCCGCg -3'
miRNA:   3'- gCGC-----AGAGCU--UGCGGCa---CUGcu-GGCG- -5'
16398 3' -56.4 NC_004084.1 + 49066 0.72 0.387955
Target:  5'- aCGCGcUCUCGGugcugcgggACGCCGUaGuCGGCgGCa -3'
miRNA:   3'- -GCGC-AGAGCU---------UGCGGCA-CuGCUGgCG- -5'
16398 3' -56.4 NC_004084.1 + 48647 0.66 0.700439
Target:  5'- uGCGUCcUGAuuCGCCu---CGACCGCg -3'
miRNA:   3'- gCGCAGaGCUu-GCGGcacuGCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.