miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16398 3' -56.4 NC_004084.1 + 56862 0.68 0.600693
Target:  5'- uCGCGggcuccggCUCGAcgGCCGUGccucgguccagacCGACCGCg -3'
miRNA:   3'- -GCGCa-------GAGCUugCGGCACu------------GCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 41463 0.69 0.541831
Target:  5'- gGCG-CUCGAagaccccgACGUCGcGACGcCCGCc -3'
miRNA:   3'- gCGCaGAGCU--------UGCGGCaCUGCuGGCG- -5'
16398 3' -56.4 NC_004084.1 + 35597 0.69 0.551183
Target:  5'- gGCGgCUCGAACGgaucgauCCGUGACGcCCu- -3'
miRNA:   3'- gCGCaGAGCUUGC-------GGCACUGCuGGcg -5'
16398 3' -56.4 NC_004084.1 + 47580 0.69 0.562679
Target:  5'- gGaCGUUcgCGAGCGCgGUGGCGACUc- -3'
miRNA:   3'- gC-GCAGa-GCUUGCGgCACUGCUGGcg -5'
16398 3' -56.4 NC_004084.1 + 27258 0.68 0.572132
Target:  5'- cCGCG-CUCGAcgagaucucGCGguccgaaCCGcUGACGAUCGCg -3'
miRNA:   3'- -GCGCaGAGCU---------UGC-------GGC-ACUGCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 17544 0.68 0.583736
Target:  5'- gGCGUCaCGAGCGUCG--ACGACaGCg -3'
miRNA:   3'- gCGCAGaGCUUGCGGCacUGCUGgCG- -5'
16398 3' -56.4 NC_004084.1 + 23706 0.68 0.583736
Target:  5'- aGCGUCUCccagacggcgauGGACGCgGUGAgCGACUc- -3'
miRNA:   3'- gCGCAGAG------------CUUGCGgCACU-GCUGGcg -5'
16398 3' -56.4 NC_004084.1 + 35113 0.68 0.583736
Target:  5'- aCGCGcUCUCGGucacGCGCuCGcucgggacUGGuCGGCCGCu -3'
miRNA:   3'- -GCGC-AGAGCU----UGCG-GC--------ACU-GCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 38370 0.68 0.583736
Target:  5'- aCGCcggaUCGAGCGCgGgaaGGCGACCGa -3'
miRNA:   3'- -GCGcag-AGCUUGCGgCa--CUGCUGGCg -5'
16398 3' -56.4 NC_004084.1 + 10273 0.7 0.489974
Target:  5'- aGCcaCUCGAGCGggaguugcucaCCGUGACGacgaccgGCCGCa -3'
miRNA:   3'- gCGcaGAGCUUGC-----------GGCACUGC-------UGGCG- -5'
16398 3' -56.4 NC_004084.1 + 28981 0.7 0.471244
Target:  5'- cCGCGUUcgCGGugaagcuCGCCGUcGACGgcaACCGCg -3'
miRNA:   3'- -GCGCAGa-GCUu------GCGGCA-CUGC---UGGCG- -5'
16398 3' -56.4 NC_004084.1 + 52147 0.7 0.471244
Target:  5'- uGCGUCgugaucaUGGACGCCGaccacgucGACGaACCGCu -3'
miRNA:   3'- gCGCAGa------GCUUGCGGCa-------CUGC-UGGCG- -5'
16398 3' -56.4 NC_004084.1 + 36821 0.75 0.2528
Target:  5'- aGCGUCgaCGAACGCCGaucGAaCGAgCCGCg -3'
miRNA:   3'- gCGCAGa-GCUUGCGGCa--CU-GCU-GGCG- -5'
16398 3' -56.4 NC_004084.1 + 45649 0.75 0.26568
Target:  5'- gGCGUCUCGGAUGCCGacaacgacgaGACGGuCgGCg -3'
miRNA:   3'- gCGCAGAGCUUGCGGCa---------CUGCU-GgCG- -5'
16398 3' -56.4 NC_004084.1 + 33317 0.74 0.307501
Target:  5'- cCGCa-CUUGAcGCGCCGaaUGACGACCGUa -3'
miRNA:   3'- -GCGcaGAGCU-UGCGGC--ACUGCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 2182 0.72 0.370801
Target:  5'- aGuCG-CUCGAGCGCCGgGACGGCaagauGCa -3'
miRNA:   3'- gC-GCaGAGCUUGCGGCaCUGCUGg----CG- -5'
16398 3' -56.4 NC_004084.1 + 56463 0.71 0.433053
Target:  5'- gCGCGcUCUCGGucuuCCGUGACG-CUGCg -3'
miRNA:   3'- -GCGC-AGAGCUugc-GGCACUGCuGGCG- -5'
16398 3' -56.4 NC_004084.1 + 3334 0.71 0.433053
Target:  5'- gCGCGUCUCGGACGggG-GAgGAgCGCg -3'
miRNA:   3'- -GCGCAGAGCUUGCggCaCUgCUgGCG- -5'
16398 3' -56.4 NC_004084.1 + 29343 0.7 0.461532
Target:  5'- aCGCGcUCUCGAacucGCGCUGgucGACGcCCGg -3'
miRNA:   3'- -GCGC-AGAGCU----UGCGGCa--CUGCuGGCg -5'
16398 3' -56.4 NC_004084.1 + 43346 0.7 0.461532
Target:  5'- aCG-GUCUCGAACGCCGaGuCGAacaucaCGCu -3'
miRNA:   3'- -GCgCAGAGCUUGCGGCaCuGCUg-----GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.