Results 21 - 40 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16398 | 3' | -56.4 | NC_004084.1 | + | 56862 | 0.68 | 0.600693 |
Target: 5'- uCGCGggcuccggCUCGAcgGCCGUGccucgguccagacCGACCGCg -3' miRNA: 3'- -GCGCa-------GAGCUugCGGCACu------------GCUGGCG- -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 38370 | 0.68 | 0.583736 |
Target: 5'- aCGCcggaUCGAGCGCgGgaaGGCGACCGa -3' miRNA: 3'- -GCGcag-AGCUUGCGgCa--CUGCUGGCg -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 43346 | 0.7 | 0.461532 |
Target: 5'- aCG-GUCUCGAACGCCGaGuCGAacaucaCGCu -3' miRNA: 3'- -GCgCAGAGCUUGCGGCaCuGCUg-----GCG- -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 29343 | 0.7 | 0.461532 |
Target: 5'- aCGCGcUCUCGAacucGCGCUGgucGACGcCCGg -3' miRNA: 3'- -GCGC-AGAGCU----UGCGGCa--CUGCuGGCg -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 3334 | 0.71 | 0.433053 |
Target: 5'- gCGCGUCUCGGACGggG-GAgGAgCGCg -3' miRNA: 3'- -GCGCAGAGCUUGCggCaCUgCUgGCG- -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 56463 | 0.71 | 0.433053 |
Target: 5'- gCGCGcUCUCGGucuuCCGUGACG-CUGCg -3' miRNA: 3'- -GCGC-AGAGCUugc-GGCACUGCuGGCG- -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 2182 | 0.72 | 0.370801 |
Target: 5'- aGuCG-CUCGAGCGCCGgGACGGCaagauGCa -3' miRNA: 3'- gC-GCaGAGCUUGCGGCaCUGCUGg----CG- -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 33317 | 0.74 | 0.307501 |
Target: 5'- cCGCa-CUUGAcGCGCCGaaUGACGACCGUa -3' miRNA: 3'- -GCGcaGAGCU-UGCGGC--ACUGCUGGCG- -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 45649 | 0.75 | 0.26568 |
Target: 5'- gGCGUCUCGGAUGCCGacaacgacgaGACGGuCgGCg -3' miRNA: 3'- gCGCAGAGCUUGCGGCa---------CUGCU-GgCG- -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 36821 | 0.75 | 0.2528 |
Target: 5'- aGCGUCgaCGAACGCCGaucGAaCGAgCCGCg -3' miRNA: 3'- gCGCAGa-GCUUGCGGCa--CU-GCU-GGCG- -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 52147 | 0.7 | 0.471244 |
Target: 5'- uGCGUCgugaucaUGGACGCCGaccacgucGACGaACCGCu -3' miRNA: 3'- gCGCAGa------GCUUGCGGCa-------CUGC-UGGCG- -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 28981 | 0.7 | 0.471244 |
Target: 5'- cCGCGUUcgCGGugaagcuCGCCGUcGACGgcaACCGCg -3' miRNA: 3'- -GCGCAGa-GCUu------GCGGCA-CUGC---UGGCG- -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 35113 | 0.68 | 0.583736 |
Target: 5'- aCGCGcUCUCGGucacGCGCuCGcucgggacUGGuCGGCCGCu -3' miRNA: 3'- -GCGC-AGAGCU----UGCG-GC--------ACU-GCUGGCG- -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 23706 | 0.68 | 0.583736 |
Target: 5'- aGCGUCUCccagacggcgauGGACGCgGUGAgCGACUc- -3' miRNA: 3'- gCGCAGAG------------CUUGCGgCACU-GCUGGcg -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 17544 | 0.68 | 0.583736 |
Target: 5'- gGCGUCaCGAGCGUCG--ACGACaGCg -3' miRNA: 3'- gCGCAGaGCUUGCGGCacUGCUGgCG- -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 27258 | 0.68 | 0.572132 |
Target: 5'- cCGCG-CUCGAcgagaucucGCGguccgaaCCGcUGACGAUCGCg -3' miRNA: 3'- -GCGCaGAGCU---------UGC-------GGC-ACUGCUGGCG- -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 47580 | 0.69 | 0.562679 |
Target: 5'- gGaCGUUcgCGAGCGCgGUGGCGACUc- -3' miRNA: 3'- gC-GCAGa-GCUUGCGgCACUGCUGGcg -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 35597 | 0.69 | 0.551183 |
Target: 5'- gGCGgCUCGAACGgaucgauCCGUGACGcCCu- -3' miRNA: 3'- gCGCaGAGCUUGC-------GGCACUGCuGGcg -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 41463 | 0.69 | 0.541831 |
Target: 5'- gGCG-CUCGAagaccccgACGUCGcGACGcCCGCc -3' miRNA: 3'- gCGCaGAGCU--------UGCGGCaCUGCuGGCG- -5' |
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16398 | 3' | -56.4 | NC_004084.1 | + | 10273 | 0.7 | 0.489974 |
Target: 5'- aGCcaCUCGAGCGggaguugcucaCCGUGACGacgaccgGCCGCa -3' miRNA: 3'- gCGcaGAGCUUGC-----------GGCACUGC-------UGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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