miRNA display CGI


Results 1 - 20 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16398 3' -56.4 NC_004084.1 + 23790 0.66 0.741684
Target:  5'- cCGCGUC-Cau-CGCCGUcugggaGACGcucACCGCg -3'
miRNA:   3'- -GCGCAGaGcuuGCGGCA------CUGC---UGGCG- -5'
16398 3' -56.4 NC_004084.1 + 53137 0.67 0.636898
Target:  5'- gGaCGUCUCGuuuacugcgGACGCCGUGcCaGCCGg -3'
miRNA:   3'- gC-GCAGAGC---------UUGCGGCACuGcUGGCg -5'
16398 3' -56.4 NC_004084.1 + 51247 0.68 0.594324
Target:  5'- gCGCGUgCUCG-GCGaCCGUcuCGAUCGCc -3'
miRNA:   3'- -GCGCA-GAGCuUGC-GGCAcuGCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 22854 0.77 0.186031
Target:  5'- aCGUGacCUCGAACGCCGUGAacACCGUc -3'
miRNA:   3'- -GCGCa-GAGCUUGCGGCACUgcUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 515 0.66 0.710869
Target:  5'- cCGcCGUCUCGAGguCGCCGUaGACGcucUCGa -3'
miRNA:   3'- -GC-GCAGAGCUU--GCGGCA-CUGCu--GGCg -5'
16398 3' -56.4 NC_004084.1 + 57327 0.66 0.700439
Target:  5'- uCGCGUCaUCGccGACGCgGUcGugGACguaguCGCg -3'
miRNA:   3'- -GCGCAG-AGC--UUGCGgCA-CugCUG-----GCG- -5'
16398 3' -56.4 NC_004084.1 + 6975 0.67 0.689946
Target:  5'- -cCGaCUCGAGCGCCauuuCGAUCGCg -3'
miRNA:   3'- gcGCaGAGCUUGCGGcacuGCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 56545 0.67 0.683625
Target:  5'- aGCGUCaCGGaagaccgagagcGCGCCGUcgagaucgucguuccGACGguGCCGCu -3'
miRNA:   3'- gCGCAGaGCU------------UGCGGCA---------------CUGC--UGGCG- -5'
16398 3' -56.4 NC_004084.1 + 18932 0.67 0.658195
Target:  5'- uGCGUaCUCGAGCaGCuCGUcGACGAggucCCGg -3'
miRNA:   3'- gCGCA-GAGCUUG-CG-GCA-CUGCU----GGCg -5'
16398 3' -56.4 NC_004084.1 + 42072 0.67 0.636898
Target:  5'- uCGCGUCagCGAACGCUGccgGAucCGGCCc- -3'
miRNA:   3'- -GCGCAGa-GCUUGCGGCa--CU--GCUGGcg -5'
16398 3' -56.4 NC_004084.1 + 29283 0.67 0.658195
Target:  5'- aCGCGcUCUgGAacaucgACGCCGagcagGGCGAguuCCGCu -3'
miRNA:   3'- -GCGC-AGAgCU------UGCGGCa----CUGCU---GGCG- -5'
16398 3' -56.4 NC_004084.1 + 10807 0.67 0.679401
Target:  5'- aGCcUCUgGAGCGCCGaacucGugGugcuCCGCg -3'
miRNA:   3'- gCGcAGAgCUUGCGGCa----CugCu---GGCG- -5'
16398 3' -56.4 NC_004084.1 + 43648 0.66 0.741684
Target:  5'- cCGCGcCUCGu-CGggaUGACGGCCGCc -3'
miRNA:   3'- -GCGCaGAGCuuGCggcACUGCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 56467 0.67 0.657132
Target:  5'- aGCGUCUcCGAgaggucgaugucgAUGCCGUacgGugGAuCCGUg -3'
miRNA:   3'- gCGCAGA-GCU-------------UGCGGCA---CugCU-GGCG- -5'
16398 3' -56.4 NC_004084.1 + 11645 0.66 0.731502
Target:  5'- cCGCGUCcgUGAACGUCuccugugGGCGGuCUGCg -3'
miRNA:   3'- -GCGCAGa-GCUUGCGGca-----CUGCU-GGCG- -5'
16398 3' -56.4 NC_004084.1 + 58397 0.67 0.683625
Target:  5'- uGcCGUCUCGAugGUgGaUGugGAcggaggagaccucguCCGCa -3'
miRNA:   3'- gC-GCAGAGCUugCGgC-ACugCU---------------GGCG- -5'
16398 3' -56.4 NC_004084.1 + 22574 0.67 0.655004
Target:  5'- aCGCGUUcaCGAGCauguccccggcgucGCCGgggucGGCGGCCGUg -3'
miRNA:   3'- -GCGCAGa-GCUUG--------------CGGCa----CUGCUGGCG- -5'
16398 3' -56.4 NC_004084.1 + 39473 0.68 0.604943
Target:  5'- gGCGUgUCGGggauguagACGCaCGUGAaGACgGCg -3'
miRNA:   3'- gCGCAgAGCU--------UGCG-GCACUgCUGgCG- -5'
16398 3' -56.4 NC_004084.1 + 31432 0.66 0.721227
Target:  5'- gCGCGaugCUCG-ACGUCGacGACGaACUGCu -3'
miRNA:   3'- -GCGCa--GAGCuUGCGGCa-CUGC-UGGCG- -5'
16398 3' -56.4 NC_004084.1 + 48647 0.66 0.700439
Target:  5'- uGCGUCcUGAuuCGCCu---CGACCGCg -3'
miRNA:   3'- gCGCAGaGCUu-GCGGcacuGCUGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.