miRNA display CGI


Results 1 - 18 of 18 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16398 5' -48.7 NC_004084.1 + 27897 0.66 0.980403
Target:  5'- cGGACGCcgCGg---UCGAUGUCCa-- -3'
miRNA:   3'- -CCUGUGuaGCaagaAGCUGUAGGcuu -5'
16398 5' -48.7 NC_004084.1 + 9278 0.66 0.980403
Target:  5'- --uCGCGUCGaacgggagUUCagacUCGACAUCCGAAg -3'
miRNA:   3'- ccuGUGUAGC--------AAGa---AGCUGUAGGCUU- -5'
16398 5' -48.7 NC_004084.1 + 39230 0.67 0.961721
Target:  5'- cGGAgACGUCG-UCUaCGACAUCgGc- -3'
miRNA:   3'- -CCUgUGUAGCaAGAaGCUGUAGgCuu -5'
16398 5' -48.7 NC_004084.1 + 20825 0.67 0.957698
Target:  5'- uGGGCAguUCG-UUUUCGACGUCguCGAc -3'
miRNA:   3'- -CCUGUguAGCaAGAAGCUGUAG--GCUu -5'
16398 5' -48.7 NC_004084.1 + 42590 0.67 0.957698
Target:  5'- cGGGCGCAguucucugCGcUCUUUGACGUCUuuGAGg -3'
miRNA:   3'- -CCUGUGUa-------GCaAGAAGCUGUAGG--CUU- -5'
16398 5' -48.7 NC_004084.1 + 20910 0.68 0.943927
Target:  5'- aGGACAuCAUCGacgUCcgaaUCGACgaaGUCCGAGa -3'
miRNA:   3'- -CCUGU-GUAGCa--AGa---AGCUG---UAGGCUU- -5'
16398 5' -48.7 NC_004084.1 + 17978 0.68 0.927517
Target:  5'- cGACACGUCGgcgUCUUCaGACGagcUCGAAa -3'
miRNA:   3'- cCUGUGUAGCa--AGAAG-CUGUa--GGCUU- -5'
16398 5' -48.7 NC_004084.1 + 12512 0.69 0.908422
Target:  5'- cGGucguCACggCGUUCgagacgcggUUGGCAUCCGAAa -3'
miRNA:   3'- -CCu---GUGuaGCAAGa--------AGCUGUAGGCUU- -5'
16398 5' -48.7 NC_004084.1 + 40847 0.69 0.901465
Target:  5'- cGGACGCuUCGg-CUUCGACugccgaGUCCGGu -3'
miRNA:   3'- -CCUGUGuAGCaaGAAGCUG------UAGGCUu -5'
16398 5' -48.7 NC_004084.1 + 51222 0.7 0.886683
Target:  5'- uGGGCgugguGCGUCGagCagcUCGACGUCCGGAu -3'
miRNA:   3'- -CCUG-----UGUAGCaaGa--AGCUGUAGGCUU- -5'
16398 5' -48.7 NC_004084.1 + 39855 0.7 0.878868
Target:  5'- cGACcuCGUCGccgUCUUCGGCGUCgGGAu -3'
miRNA:   3'- cCUGu-GUAGCa--AGAAGCUGUAGgCUU- -5'
16398 5' -48.7 NC_004084.1 + 45745 0.73 0.744774
Target:  5'- cGACGCcgaccgucucGUCGUUg-UCGGCAUCCGAGa -3'
miRNA:   3'- cCUGUG----------UAGCAAgaAGCUGUAGGCUU- -5'
16398 5' -48.7 NC_004084.1 + 31144 0.73 0.709519
Target:  5'- uGACgACAUCGUUCacaccuuucggCGACAUCCGGGu -3'
miRNA:   3'- cCUG-UGUAGCAAGaa---------GCUGUAGGCUU- -5'
16398 5' -48.7 NC_004084.1 + 35139 0.73 0.697185
Target:  5'- gGGACugGUCGgccgcucggUCUccagaccgaaccguUCGACAUCCGGu -3'
miRNA:   3'- -CCUGugUAGCa--------AGA--------------AGCUGUAGGCUu -5'
16398 5' -48.7 NC_004084.1 + 4241 0.75 0.609441
Target:  5'- aGGAgGCGUCGUUCcUCGAguUCCGc- -3'
miRNA:   3'- -CCUgUGUAGCAAGaAGCUguAGGCuu -5'
16398 5' -48.7 NC_004084.1 + 39511 0.75 0.586652
Target:  5'- aGGACGuCAUCGUUCg-CGACGUCCu-- -3'
miRNA:   3'- -CCUGU-GUAGCAAGaaGCUGUAGGcuu -5'
16398 5' -48.7 NC_004084.1 + 11969 0.8 0.37764
Target:  5'- cGAUcucgGCAUCGaagUCUUCGACGUCCGGAu -3'
miRNA:   3'- cCUG----UGUAGCa--AGAAGCUGUAGGCUU- -5'
16398 5' -48.7 NC_004084.1 + 12467 1.1 0.004737
Target:  5'- cGGACACAUCGUUCUUCGACAUCCGAAg -3'
miRNA:   3'- -CCUGUGUAGCAAGAAGCUGUAGGCUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.