Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16399 | 3' | -53.9 | NC_004084.1 | + | 12630 | 1.12 | 0.0011 |
Target: 5'- cGGAUCGGUCGGUCAACCACUCGCAGAg -3' miRNA: 3'- -CCUAGCCAGCCAGUUGGUGAGCGUCU- -5' |
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16399 | 3' | -53.9 | NC_004084.1 | + | 48710 | 0.66 | 0.844886 |
Target: 5'- cGGcAUCGGcgUCGGcCAACuCAC-CGCGGu -3' miRNA: 3'- -CC-UAGCC--AGCCaGUUG-GUGaGCGUCu -5' |
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16399 | 3' | -53.9 | NC_004084.1 | + | 45512 | 0.66 | 0.844886 |
Target: 5'- ---cCGGgcCGGUCGGCCACUCcgaGGAc -3' miRNA: 3'- ccuaGCCa-GCCAGUUGGUGAGcg-UCU- -5' |
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16399 | 3' | -53.9 | NC_004084.1 | + | 13046 | 0.66 | 0.804105 |
Target: 5'- cGAUCGacacgcugacgauUCGGUUcccaccgGAUCACUCGCAGAg -3' miRNA: 3'- cCUAGCc------------AGCCAG-------UUGGUGAGCGUCU- -5' |
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16399 | 3' | -53.9 | NC_004084.1 | + | 29770 | 0.67 | 0.789666 |
Target: 5'- ---gCGGUaGGUCGuCCcCUCGCGGAa -3' miRNA: 3'- ccuaGCCAgCCAGUuGGuGAGCGUCU- -5' |
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16399 | 3' | -53.9 | NC_004084.1 | + | 5439 | 0.67 | 0.759731 |
Target: 5'- uGGAUCGcGaUCGGcgacCAGCgCACUCGCGa- -3' miRNA: 3'- -CCUAGC-C-AGCCa---GUUG-GUGAGCGUcu -5' |
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16399 | 3' | -53.9 | NC_004084.1 | + | 39268 | 0.67 | 0.749479 |
Target: 5'- aGAUggUGGUC-GUCGAUCGCgUCGCGGAc -3' miRNA: 3'- cCUA--GCCAGcCAGUUGGUG-AGCGUCU- -5' |
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16399 | 3' | -53.9 | NC_004084.1 | + | 35136 | 0.7 | 0.620455 |
Target: 5'- --cUCGGgacUGGUCGGCCGCUCGgucucCAGAc -3' miRNA: 3'- ccuAGCCa--GCCAGUUGGUGAGC-----GUCU- -5' |
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16399 | 3' | -53.9 | NC_004084.1 | + | 25822 | 0.71 | 0.566096 |
Target: 5'- uGGAaCGGUCGcG-UAGCCACUCGCc-- -3' miRNA: 3'- -CCUaGCCAGC-CaGUUGGUGAGCGucu -5' |
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16399 | 3' | -53.9 | NC_004084.1 | + | 17213 | 0.71 | 0.555351 |
Target: 5'- -aGUCGacgcUCGGUCAaacACCGCUCGguGAa -3' miRNA: 3'- ccUAGCc---AGCCAGU---UGGUGAGCguCU- -5' |
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16399 | 3' | -53.9 | NC_004084.1 | + | 24719 | 0.71 | 0.566096 |
Target: 5'- uGGAaCGGUCGcG-UAGCCACUCGCc-- -3' miRNA: 3'- -CCUaGCCAGC-CaGUUGGUGAGCGucu -5' |
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16399 | 3' | -53.9 | NC_004084.1 | + | 58486 | 0.7 | 0.620455 |
Target: 5'- gGGGUCuucgaagucgaGGUCGuGUCGGCCACcgagaUgGCAGAg -3' miRNA: 3'- -CCUAG-----------CCAGC-CAGUUGGUG-----AgCGUCU- -5' |
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16399 | 3' | -53.9 | NC_004084.1 | + | 48088 | 0.68 | 0.718064 |
Target: 5'- ----aGGUC-GUCGACCAuCUCGCAGu -3' miRNA: 3'- ccuagCCAGcCAGUUGGU-GAGCGUCu -5' |
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16399 | 3' | -53.9 | NC_004084.1 | + | 26200 | 0.68 | 0.728635 |
Target: 5'- uGGAUCGGagguauUCGGcacagacagCGACCACUCcucuuggacugaGCGGAg -3' miRNA: 3'- -CCUAGCC------AGCCa--------GUUGGUGAG------------CGUCU- -5' |
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16399 | 3' | -53.9 | NC_004084.1 | + | 29104 | 0.68 | 0.73911 |
Target: 5'- ---aCGGUCGGgCGGCCACuccuggggcgUCGCGGu -3' miRNA: 3'- ccuaGCCAGCCaGUUGGUG----------AGCGUCu -5' |
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16399 | 3' | -53.9 | NC_004084.1 | + | 53384 | 0.67 | 0.779835 |
Target: 5'- cGAUCGccgGGUCAACgUACUCGCGGc -3' miRNA: 3'- cCUAGCcagCCAGUUG-GUGAGCGUCu -5' |
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16399 | 3' | -53.9 | NC_004084.1 | + | 50575 | 0.67 | 0.789666 |
Target: 5'- cGGGUCGaucuccUCGGUCAGuuGCUCGUg-- -3' miRNA: 3'- -CCUAGCc-----AGCCAGUUggUGAGCGucu -5' |
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16399 | 3' | -53.9 | NC_004084.1 | + | 10829 | 0.66 | 0.798376 |
Target: 5'- aGAUCGGUCGGgcagggauacCAGCCucuggagcgccgaACUCGUGGu -3' miRNA: 3'- cCUAGCCAGCCa---------GUUGG-------------UGAGCGUCu -5' |
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16399 | 3' | -53.9 | NC_004084.1 | + | 21789 | 0.66 | 0.808831 |
Target: 5'- cGGAUcucgucgaCGGUCGccgacGUCAGCUguGCUCGCAa- -3' miRNA: 3'- -CCUA--------GCCAGC-----CAGUUGG--UGAGCGUcu -5' |
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16399 | 3' | -53.9 | NC_004084.1 | + | 9594 | 0.75 | 0.332448 |
Target: 5'- -cGUCGGUCGGUCGGCCACgacuuccggucggCGCcGGg -3' miRNA: 3'- ccUAGCCAGCCAGUUGGUGa------------GCGuCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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