miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
164 3' -55.6 AC_000007.1 + 4214 0.66 0.585331
Target:  5'- gGAGGUAGcACCacUGCA-GAGCUUCaUGCu -3'
miRNA:   3'- gCUCCAUU-UGG--ACGUcCUCGAGG-GCG- -5'
164 3' -55.6 AC_000007.1 + 22651 0.66 0.556254
Target:  5'- uGAuGGUGcgcAGCCUGUGGagugaaaacuucaccGAGCUgCCGCg -3'
miRNA:   3'- gCU-CCAU---UUGGACGUC---------------CUCGAgGGCG- -5'
164 3' -55.6 AC_000007.1 + 8333 0.67 0.529794
Target:  5'- aGAuGG-GAGCUguccaugGUcuGGAGCUCCCGCg -3'
miRNA:   3'- gCU-CCaUUUGGa------CGu-CCUCGAGGGCG- -5'
164 3' -55.6 AC_000007.1 + 26118 0.67 0.504881
Target:  5'- gGGGGUuuACCUggacccccaguccgGCgAGGAGCUcaacccaaucccCCCGCc -3'
miRNA:   3'- gCUCCAuuUGGA--------------CG-UCCUCGA------------GGGCG- -5'
164 3' -55.6 AC_000007.1 + 13602 0.67 0.486796
Target:  5'- aGAGGc-GGCgCUGCgaaAGGAaaGCUUCCGCa -3'
miRNA:   3'- gCUCCauUUG-GACG---UCCU--CGAGGGCG- -5'
164 3' -55.6 AC_000007.1 + 27499 0.67 0.486796
Target:  5'- aGGGGcgcAGCUUGCGGGcGGCUUUCGUc -3'
miRNA:   3'- gCUCCau-UUGGACGUCC-UCGAGGGCG- -5'
164 3' -55.6 AC_000007.1 + 11333 0.67 0.476303
Target:  5'- gCGAGGgagagGAGCCcgaggagaUGCGGGAucgaaaGUUCCaCGCa -3'
miRNA:   3'- -GCUCCa----UUUGG--------ACGUCCU------CGAGG-GCG- -5'
164 3' -55.6 AC_000007.1 + 23361 0.69 0.415885
Target:  5'- uGGGGcgAuuCCUGCAGGcGUaCCUGCa -3'
miRNA:   3'- gCUCCa-UuuGGACGUCCuCGaGGGCG- -5'
164 3' -55.6 AC_000007.1 + 23301 0.7 0.34308
Target:  5'- -cAGGUAcGCCUGCAGGAaucGC-CCCa- -3'
miRNA:   3'- gcUCCAUuUGGACGUCCU---CGaGGGcg -5'
164 3' -55.6 AC_000007.1 + 12007 0.71 0.310279
Target:  5'- uGAGcGUGAGCCgGCGGcgcGAGCUCagcgaCCGCg -3'
miRNA:   3'- gCUC-CAUUUGGaCGUC---CUCGAG-----GGCG- -5'
164 3' -55.6 AC_000007.1 + 8371 0.71 0.310279
Target:  5'- -cAGGUcag---GCGGGAGCUCCUGCa -3'
miRNA:   3'- gcUCCAuuuggaCGUCCUCGAGGGCG- -5'
164 3' -55.6 AC_000007.1 + 21430 0.72 0.266346
Target:  5'- gCGGGGUAAGCCUGUcccucgcgcaugguGGGAGCgagguagccuacgaaUCCUGa -3'
miRNA:   3'- -GCUCCAUUUGGACG--------------UCCUCG---------------AGGGCg -5'
164 3' -55.6 AC_000007.1 + 8440 1.11 0.000385
Target:  5'- gCGAGGUAAACCUGCAGGAGCUCCCGCc -3'
miRNA:   3'- -GCUCCAUUUGGACGUCCUCGAGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.