miRNA display CGI


Results 1 - 20 of 84 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1640 3' -61.4 NC_001347.2 + 99436 0.66 0.788982
Target:  5'- cUUCUCCCGUcuCCGaCCGCCGUUGaCAGu -3'
miRNA:   3'- -AGGAGGGCG--GGUcGGUGGCAGC-GUUg -5'
1640 3' -61.4 NC_001347.2 + 473 0.66 0.788122
Target:  5'- gUCCUCCgcaccacaCGCaaCUAGUCGCCGUccacacaCGCAACu -3'
miRNA:   3'- -AGGAGG--------GCG--GGUCGGUGGCA-------GCGUUG- -5'
1640 3' -61.4 NC_001347.2 + 229952 0.66 0.788122
Target:  5'- gUCCUCCgcaccacaCGCaaCUAGUCGCCGUccacacaCGCAACu -3'
miRNA:   3'- -AGGAGG--------GCG--GGUCGGUGGCA-------GCGUUG- -5'
1640 3' -61.4 NC_001347.2 + 115015 0.66 0.788122
Target:  5'- gCCg-CCGCUCAuaaugccGUCACCGUCGCGu- -3'
miRNA:   3'- aGGagGGCGGGU-------CGGUGGCAGCGUug -5'
1640 3' -61.4 NC_001347.2 + 68753 0.66 0.7838
Target:  5'- --gUgCCGCCgCAGCCGgcagagcgccgaaccCCGUCGCAGa -3'
miRNA:   3'- aggAgGGCGG-GUCGGU---------------GGCAGCGUUg -5'
1640 3' -61.4 NC_001347.2 + 188150 0.66 0.780321
Target:  5'- gUUCUCUgGCaCCGGCCGCCGaaGCc-- -3'
miRNA:   3'- -AGGAGGgCG-GGUCGGUGGCagCGuug -5'
1640 3' -61.4 NC_001347.2 + 30601 0.66 0.780321
Target:  5'- gCUUCCUGCggCCGGCCGCgGUgccgGCGGCu -3'
miRNA:   3'- aGGAGGGCG--GGUCGGUGgCAg---CGUUG- -5'
1640 3' -61.4 NC_001347.2 + 41520 0.66 0.780321
Target:  5'- gCCgcacCCCGCCaCAuCCACCGcaUCGCAc- -3'
miRNA:   3'- aGGa---GGGCGG-GUcGGUGGC--AGCGUug -5'
1640 3' -61.4 NC_001347.2 + 105185 0.66 0.771542
Target:  5'- uUCgUCuCUGCCUcuCCuCCGUCGCGGCc -3'
miRNA:   3'- -AGgAG-GGCGGGucGGuGGCAGCGUUG- -5'
1640 3' -61.4 NC_001347.2 + 905 0.66 0.771542
Target:  5'- gCCcCCCGCCCcuuGGUCGCgGcCGCGGg -3'
miRNA:   3'- aGGaGGGCGGG---UCGGUGgCaGCGUUg -5'
1640 3' -61.4 NC_001347.2 + 120906 0.66 0.771542
Target:  5'- cUCCUacCCUGUcuCCA-CCACCGUCGUAGg -3'
miRNA:   3'- -AGGA--GGGCG--GGUcGGUGGCAGCGUUg -5'
1640 3' -61.4 NC_001347.2 + 113178 0.66 0.771542
Target:  5'- -aCgCgCGcCCCAGCCGCCGgCGUGGCg -3'
miRNA:   3'- agGaGgGC-GGGUCGGUGGCaGCGUUG- -5'
1640 3' -61.4 NC_001347.2 + 107751 0.66 0.771542
Target:  5'- -aCUCgCGguccacauCCCAuUCGCCGUCGCAACa -3'
miRNA:   3'- agGAGgGC--------GGGUcGGUGGCAGCGUUG- -5'
1640 3' -61.4 NC_001347.2 + 64573 0.66 0.762652
Target:  5'- aCCUCUccaacuguagCGCCCAcggucuggccGUCAUCGUCGCGGg -3'
miRNA:   3'- aGGAGG----------GCGGGU----------CGGUGGCAGCGUUg -5'
1640 3' -61.4 NC_001347.2 + 82898 0.66 0.762652
Target:  5'- gCCUCCCGagcgagCgGGCCGCCGcuaUCGCcAUg -3'
miRNA:   3'- aGGAGGGCg-----GgUCGGUGGC---AGCGuUG- -5'
1640 3' -61.4 NC_001347.2 + 61263 0.66 0.762652
Target:  5'- aCCUCCUGCCacauaUAGCUcguccacacGCCGUCucgucacacgGCAACa -3'
miRNA:   3'- aGGAGGGCGG-----GUCGG---------UGGCAG----------CGUUG- -5'
1640 3' -61.4 NC_001347.2 + 76980 0.66 0.762652
Target:  5'- gCCggcgCCCGCCguGCCGgUGacgaGCAGCg -3'
miRNA:   3'- aGGa---GGGCGGguCGGUgGCag--CGUUG- -5'
1640 3' -61.4 NC_001347.2 + 188913 0.66 0.762652
Target:  5'- gCC-CCCGCuCCGGCC-CCGacaccuaccuUCGCGGg -3'
miRNA:   3'- aGGaGGGCG-GGUCGGuGGC----------AGCGUUg -5'
1640 3' -61.4 NC_001347.2 + 156655 0.66 0.762652
Target:  5'- gCCUCggCCGCCgCcGCCACCcauggcggcggGUCGUGGCg -3'
miRNA:   3'- aGGAG--GGCGG-GuCGGUGG-----------CAGCGUUG- -5'
1640 3' -61.4 NC_001347.2 + 188179 0.66 0.761757
Target:  5'- gCUgCCCGUUCGGCgGCCGUCGgcuauuaCGACg -3'
miRNA:   3'- aGGaGGGCGGGUCGgUGGCAGC-------GUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.