miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1640 3' -61.4 NC_001347.2 + 130583 1.08 0.001713
Target:  5'- cUCCUCCCGCCCAGCCACCGUCGCAACc -3'
miRNA:   3'- -AGGAGGGCGGGUCGGUGGCAGCGUUG- -5'
1640 3' -61.4 NC_001347.2 + 100936 0.77 0.220149
Target:  5'- gCCUCgCGCUCAcGCCGCCGcCGCGAUg -3'
miRNA:   3'- aGGAGgGCGGGU-CGGUGGCaGCGUUG- -5'
1640 3' -61.4 NC_001347.2 + 174116 0.76 0.252464
Target:  5'- gCCguaCCCGCCCcagcagaccAGCCACCGUCccucaGCGACg -3'
miRNA:   3'- aGGa--GGGCGGG---------UCGGUGGCAG-----CGUUG- -5'
1640 3' -61.4 NC_001347.2 + 193129 0.75 0.294984
Target:  5'- uUCCUCCuCGUCgucGCCGCCGUCGCGc- -3'
miRNA:   3'- -AGGAGG-GCGGgu-CGGUGGCAGCGUug -5'
1640 3' -61.4 NC_001347.2 + 90331 0.74 0.350157
Target:  5'- gUCCUCCgGCCCGcuaucGCCACCGcUGCuACu -3'
miRNA:   3'- -AGGAGGgCGGGU-----CGGUGGCaGCGuUG- -5'
1640 3' -61.4 NC_001347.2 + 38461 0.73 0.372659
Target:  5'- gCCggCCCcgccgcgcaGCCCAGCCACCG-CGCGGg -3'
miRNA:   3'- aGGa-GGG---------CGGGUCGGUGGCaGCGUUg -5'
1640 3' -61.4 NC_001347.2 + 60514 0.72 0.420519
Target:  5'- aUCCUgUCGUUCAG-CAUCGUCGCGGCg -3'
miRNA:   3'- -AGGAgGGCGGGUCgGUGGCAGCGUUG- -5'
1640 3' -61.4 NC_001347.2 + 166126 0.72 0.420519
Target:  5'- gCgaUCCGCuUCGGCCGCCGcCGCAACg -3'
miRNA:   3'- aGgaGGGCG-GGUCGGUGGCaGCGUUG- -5'
1640 3' -61.4 NC_001347.2 + 64297 0.72 0.42885
Target:  5'- gUCCUCCCGCCCAGgaCCugUGUaGCcAUa -3'
miRNA:   3'- -AGGAGGGCGGGUC--GGugGCAgCGuUG- -5'
1640 3' -61.4 NC_001347.2 + 178850 0.71 0.471909
Target:  5'- gUCCUCUguCGuCCCGGCCuCCGUCGagAGCg -3'
miRNA:   3'- -AGGAGG--GC-GGGUCGGuGGCAGCg-UUG- -5'
1640 3' -61.4 NC_001347.2 + 21363 0.71 0.471909
Target:  5'- gUCCUCgUCGCCUuccagcuuaccGCCACCGUCGCccucAGCg -3'
miRNA:   3'- -AGGAG-GGCGGGu----------CGGUGGCAGCG----UUG- -5'
1640 3' -61.4 NC_001347.2 + 119492 0.71 0.497862
Target:  5'- aUCCaaagaCCUGgCCAGCUACCGaucuuuuUCGCAGCa -3'
miRNA:   3'- -AGGa----GGGCgGGUCGGUGGC-------AGCGUUG- -5'
1640 3' -61.4 NC_001347.2 + 75391 0.71 0.498769
Target:  5'- cUCC-CCCGCUCcaagcgggagcGGCgGCCGUgGCGGCg -3'
miRNA:   3'- -AGGaGGGCGGG-----------UCGgUGGCAgCGUUG- -5'
1640 3' -61.4 NC_001347.2 + 112378 0.71 0.498769
Target:  5'- cCCgcgugCCCGCCaCuuCCACCGUCGCuauuGACg -3'
miRNA:   3'- aGGa----GGGCGG-GucGGUGGCAGCG----UUG- -5'
1640 3' -61.4 NC_001347.2 + 110058 0.71 0.498769
Target:  5'- cCCUCCC-CCCAucCCGCCuUCGCAAUg -3'
miRNA:   3'- aGGAGGGcGGGUc-GGUGGcAGCGUUG- -5'
1640 3' -61.4 NC_001347.2 + 184491 0.71 0.507874
Target:  5'- gCCUCgggCgGCCCGGCCGCCG-CGCc-- -3'
miRNA:   3'- aGGAG---GgCGGGUCGGUGGCaGCGuug -5'
1640 3' -61.4 NC_001347.2 + 38674 0.71 0.507874
Target:  5'- aCCgucgugCCgGCCCA-CCGCCGgCGCAGCu -3'
miRNA:   3'- aGGa-----GGgCGGGUcGGUGGCaGCGUUG- -5'
1640 3' -61.4 NC_001347.2 + 222743 0.7 0.517048
Target:  5'- cUCCUCCCcgcuGCCgCGGCCAUUGcCGCcGCc -3'
miRNA:   3'- -AGGAGGG----CGG-GUCGGUGGCaGCGuUG- -5'
1640 3' -61.4 NC_001347.2 + 178886 0.7 0.53559
Target:  5'- gUCCUCgucgCCGCCgCuGCCGCCgGUCGUggUg -3'
miRNA:   3'- -AGGAG----GGCGG-GuCGGUGG-CAGCGuuG- -5'
1640 3' -61.4 NC_001347.2 + 67334 0.7 0.553416
Target:  5'- cUCCUcaucaucauuaacCCCGCagCC-GCCGCCGUCGCcGCc -3'
miRNA:   3'- -AGGA-------------GGGCG--GGuCGGUGGCAGCGuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.