miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1640 3' -61.4 NC_001347.2 + 62735 0.66 0.760861
Target:  5'- cUCCUCCCucgcgccGCCCcgugacgacgagcGGCggccgacccCGCCGUUGCGGCc -3'
miRNA:   3'- -AGGAGGG-------CGGG-------------UCG---------GUGGCAGCGUUG- -5'
1640 3' -61.4 NC_001347.2 + 68812 0.66 0.757268
Target:  5'- uUCCagCCCGCCUAGCaaCACCcacaaacaacgucacGaCGCAACg -3'
miRNA:   3'- -AGGa-GGGCGGGUCG--GUGG---------------CaGCGUUG- -5'
1640 3' -61.4 NC_001347.2 + 189694 0.66 0.75366
Target:  5'- gUCC-CCCGCCaCAucGCCGCUGUC-CAu- -3'
miRNA:   3'- -AGGaGGGCGG-GU--CGGUGGCAGcGUug -5'
1640 3' -61.4 NC_001347.2 + 5872 0.66 0.75366
Target:  5'- -gCUCUCGCCagucGCCGCaGUCGCAccACa -3'
miRNA:   3'- agGAGGGCGGgu--CGGUGgCAGCGU--UG- -5'
1640 3' -61.4 NC_001347.2 + 63107 0.66 0.744573
Target:  5'- gCCguggCCGCCgCGGCCGCCGcUGUGGCc -3'
miRNA:   3'- aGGag--GGCGG-GUCGGUGGCaGCGUUG- -5'
1640 3' -61.4 NC_001347.2 + 172793 0.66 0.744573
Target:  5'- cCUUCuuGCCCA--CGCCGUCGCu-- -3'
miRNA:   3'- aGGAGggCGGGUcgGUGGCAGCGuug -5'
1640 3' -61.4 NC_001347.2 + 203212 0.67 0.735398
Target:  5'- gCCUCUCucauggaUCCAcuGUCACCGUCGCGAUg -3'
miRNA:   3'- aGGAGGGc------GGGU--CGGUGGCAGCGUUG- -5'
1640 3' -61.4 NC_001347.2 + 17121 0.67 0.726144
Target:  5'- gCCggucgUCCGCCguCGGCCGCCGcccaugccaCGCGACg -3'
miRNA:   3'- aGGa----GGGCGG--GUCGGUGGCa--------GCGUUG- -5'
1640 3' -61.4 NC_001347.2 + 47390 0.67 0.726144
Target:  5'- uUCCUCaucaCCGuCCCGGUCuCCGUCGUc-- -3'
miRNA:   3'- -AGGAG----GGC-GGGUCGGuGGCAGCGuug -5'
1640 3' -61.4 NC_001347.2 + 38788 0.67 0.726144
Target:  5'- ---cCCaCGCCCAGCCG--GUUGCAGCg -3'
miRNA:   3'- aggaGG-GCGGGUCGGUggCAGCGUUG- -5'
1640 3' -61.4 NC_001347.2 + 143486 0.67 0.726144
Target:  5'- gCCUaCUCGCgCCAGCCggACCGg-GCGGCc -3'
miRNA:   3'- aGGA-GGGCG-GGUCGG--UGGCagCGUUG- -5'
1640 3' -61.4 NC_001347.2 + 201552 0.67 0.725215
Target:  5'- aCCUCugCUGCCCcgAGCCGCugcguuuCGUCgGCAGCa -3'
miRNA:   3'- aGGAG--GGCGGG--UCGGUG-------GCAG-CGUUG- -5'
1640 3' -61.4 NC_001347.2 + 66638 0.67 0.716818
Target:  5'- gUCCUCCuCGUCCucguGGCgGuuguuucuCCGUCGCGAUc -3'
miRNA:   3'- -AGGAGG-GCGGG----UCGgU--------GGCAGCGUUG- -5'
1640 3' -61.4 NC_001347.2 + 68047 0.67 0.707428
Target:  5'- -gCUCCCGCCgCcGCCACCGcCaccacCAGCg -3'
miRNA:   3'- agGAGGGCGG-GuCGGUGGCaGc----GUUG- -5'
1640 3' -61.4 NC_001347.2 + 109574 0.67 0.707428
Target:  5'- gCCUUaagGCCgAGuCCACCGUCGCGc- -3'
miRNA:   3'- aGGAGgg-CGGgUC-GGUGGCAGCGUug -5'
1640 3' -61.4 NC_001347.2 + 165659 0.67 0.697982
Target:  5'- -aCUCgCGCUCAGCCGCgCGUCcaGACg -3'
miRNA:   3'- agGAGgGCGGGUCGGUG-GCAGcgUUG- -5'
1640 3' -61.4 NC_001347.2 + 118183 0.67 0.697982
Target:  5'- gUCCUCgCG-CCAGCCcCCGcCGCGc- -3'
miRNA:   3'- -AGGAGgGCgGGUCGGuGGCaGCGUug -5'
1640 3' -61.4 NC_001347.2 + 199013 0.67 0.697982
Target:  5'- -gCUCuUCGUCCAGCCGCCGcagagaCGUGGCg -3'
miRNA:   3'- agGAG-GGCGGGUCGGUGGCa-----GCGUUG- -5'
1640 3' -61.4 NC_001347.2 + 90825 0.67 0.688486
Target:  5'- cUCCUCUCGCCgCuGCCGCCuaaccuccgcUCGCAc- -3'
miRNA:   3'- -AGGAGGGCGG-GuCGGUGGc---------AGCGUug -5'
1640 3' -61.4 NC_001347.2 + 135586 0.68 0.678949
Target:  5'- gUCCaCCCgGCCCAcCUACCGUCGUc-- -3'
miRNA:   3'- -AGGaGGG-CGGGUcGGUGGCAGCGuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.