miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1640 3' -61.4 NC_001347.2 + 473 0.66 0.788122
Target:  5'- gUCCUCCgcaccacaCGCaaCUAGUCGCCGUccacacaCGCAACu -3'
miRNA:   3'- -AGGAGG--------GCG--GGUCGGUGGCA-------GCGUUG- -5'
1640 3' -61.4 NC_001347.2 + 905 0.66 0.771542
Target:  5'- gCCcCCCGCCCcuuGGUCGCgGcCGCGGg -3'
miRNA:   3'- aGGaGGGCGGG---UCGGUGgCaGCGUUg -5'
1640 3' -61.4 NC_001347.2 + 5872 0.66 0.75366
Target:  5'- -gCUCUCGCCagucGCCGCaGUCGCAccACa -3'
miRNA:   3'- agGAGGGCGGgu--CGGUGgCAGCGU--UG- -5'
1640 3' -61.4 NC_001347.2 + 17121 0.67 0.726144
Target:  5'- gCCggucgUCCGCCguCGGCCGCCGcccaugccaCGCGACg -3'
miRNA:   3'- aGGa----GGGCGG--GUCGGUGGCa--------GCGUUG- -5'
1640 3' -61.4 NC_001347.2 + 21363 0.71 0.471909
Target:  5'- gUCCUCgUCGCCUuccagcuuaccGCCACCGUCGCccucAGCg -3'
miRNA:   3'- -AGGAG-GGCGGGu----------CGGUGGCAGCG----UUG- -5'
1640 3' -61.4 NC_001347.2 + 27069 0.69 0.582855
Target:  5'- gCCUcauggaCCCGCC--GCUACCGUCGCuACa -3'
miRNA:   3'- aGGA------GGGCGGguCGGUGGCAGCGuUG- -5'
1640 3' -61.4 NC_001347.2 + 30601 0.66 0.780321
Target:  5'- gCUUCCUGCggCCGGCCGCgGUgccgGCGGCu -3'
miRNA:   3'- aGGAGGGCG--GGUCGGUGgCAg---CGUUG- -5'
1640 3' -61.4 NC_001347.2 + 38461 0.73 0.372659
Target:  5'- gCCggCCCcgccgcgcaGCCCAGCCACCG-CGCGGg -3'
miRNA:   3'- aGGa-GGG---------CGGGUCGGUGGCaGCGUUg -5'
1640 3' -61.4 NC_001347.2 + 38674 0.71 0.507874
Target:  5'- aCCgucgugCCgGCCCA-CCGCCGgCGCAGCu -3'
miRNA:   3'- aGGa-----GGgCGGGUcGGUGGCaGCGUUG- -5'
1640 3' -61.4 NC_001347.2 + 38702 0.69 0.573318
Target:  5'- -nCUCCCGUCCgAG-CGCCGUCGCc-- -3'
miRNA:   3'- agGAGGGCGGG-UCgGUGGCAGCGuug -5'
1640 3' -61.4 NC_001347.2 + 38788 0.67 0.726144
Target:  5'- ---cCCaCGCCCAGCCG--GUUGCAGCg -3'
miRNA:   3'- aggaGG-GCGGGUCGGUggCAGCGUUG- -5'
1640 3' -61.4 NC_001347.2 + 39488 0.68 0.650163
Target:  5'- cCCUCCgGCCCcgcGGCCGCgaccaaggggCGgggggCGCGGCg -3'
miRNA:   3'- aGGAGGgCGGG---UCGGUG----------GCa----GCGUUG- -5'
1640 3' -61.4 NC_001347.2 + 41520 0.66 0.780321
Target:  5'- gCCgcacCCCGCCaCAuCCACCGcaUCGCAc- -3'
miRNA:   3'- aGGa---GGGCGG-GUcGGUGGC--AGCGUug -5'
1640 3' -61.4 NC_001347.2 + 47390 0.67 0.726144
Target:  5'- uUCCUCaucaCCGuCCCGGUCuCCGUCGUc-- -3'
miRNA:   3'- -AGGAG----GGC-GGGUCGGuGGCAGCGuug -5'
1640 3' -61.4 NC_001347.2 + 59859 0.69 0.605862
Target:  5'- cCCUCCCGaagaCCuggacaccugagccuGGCCAUCGagGCAGCc -3'
miRNA:   3'- aGGAGGGCg---GG---------------UCGGUGGCagCGUUG- -5'
1640 3' -61.4 NC_001347.2 + 60514 0.72 0.420519
Target:  5'- aUCCUgUCGUUCAG-CAUCGUCGCGGCg -3'
miRNA:   3'- -AGGAgGGCGGGUCgGUGGCAGCGUUG- -5'
1640 3' -61.4 NC_001347.2 + 61263 0.66 0.762652
Target:  5'- aCCUCCUGCCacauaUAGCUcguccacacGCCGUCucgucacacgGCAACa -3'
miRNA:   3'- aGGAGGGCGG-----GUCGG---------UGGCAG----------CGUUG- -5'
1640 3' -61.4 NC_001347.2 + 62735 0.66 0.760861
Target:  5'- cUCCUCCCucgcgccGCCCcgugacgacgagcGGCggccgacccCGCCGUUGCGGCc -3'
miRNA:   3'- -AGGAGGG-------CGGG-------------UCG---------GUGGCAGCGUUG- -5'
1640 3' -61.4 NC_001347.2 + 63107 0.66 0.744573
Target:  5'- gCCguggCCGCCgCGGCCGCCGcUGUGGCc -3'
miRNA:   3'- aGGag--GGCGG-GUCGGUGGCaGCGUUG- -5'
1640 3' -61.4 NC_001347.2 + 64297 0.72 0.42885
Target:  5'- gUCCUCCCGCCCAGgaCCugUGUaGCcAUa -3'
miRNA:   3'- -AGGAGGGCGGGUC--GGugGCAgCGuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.