miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16400 5' -56.9 NC_004084.1 + 16308 1.08 0.000833
Target:  5'- gCAGCGACCACUGCGAACACCGCAGCAc -3'
miRNA:   3'- -GUCGCUGGUGACGCUUGUGGCGUCGU- -5'
16400 5' -56.9 NC_004084.1 + 49973 0.66 0.61852
Target:  5'- uCGGCGACUcguCUcGCGGACGCUGguGa- -3'
miRNA:   3'- -GUCGCUGGu--GA-CGCUUGUGGCguCgu -5'
16400 5' -56.9 NC_004084.1 + 28875 0.66 0.61852
Target:  5'- gGGCGuuCCGCaGCGAGaucuCGCCGCGGg- -3'
miRNA:   3'- gUCGCu-GGUGaCGCUU----GUGGCGUCgu -5'
16400 5' -56.9 NC_004084.1 + 39852 0.66 0.606495
Target:  5'- uCGGCGGCCGCggcgccGuCGAGCacgcugaGCUGCAGUg -3'
miRNA:   3'- -GUCGCUGGUGa-----C-GCUUG-------UGGCGUCGu -5'
16400 5' -56.9 NC_004084.1 + 5449 0.67 0.574951
Target:  5'- uCGGCGACCagcgcACUcGCGAcgaucacgacgACGCCGaCGGCc -3'
miRNA:   3'- -GUCGCUGG-----UGA-CGCU-----------UGUGGC-GUCGu -5'
16400 5' -56.9 NC_004084.1 + 5549 0.67 0.564153
Target:  5'- aGGCGACCcCU-CG-GCACCGCucgAGCAg -3'
miRNA:   3'- gUCGCUGGuGAcGCuUGUGGCG---UCGU- -5'
16400 5' -56.9 NC_004084.1 + 36243 0.67 0.55341
Target:  5'- cCGGUGGgCGCUGCGAucccuCCGcCAGCu -3'
miRNA:   3'- -GUCGCUgGUGACGCUugu--GGC-GUCGu -5'
16400 5' -56.9 NC_004084.1 + 19078 0.67 0.532117
Target:  5'- -cGCGGCCGuCUaCGucgacgucgaucAGCACCGCGGCGg -3'
miRNA:   3'- guCGCUGGU-GAcGC------------UUGUGGCGUCGU- -5'
16400 5' -56.9 NC_004084.1 + 58261 0.68 0.515298
Target:  5'- -cGCGACCacuacgccugcccugGCUGCGGGCGCUcuGCGGaCGa -3'
miRNA:   3'- guCGCUGG---------------UGACGCUUGUGG--CGUC-GU- -5'
16400 5' -56.9 NC_004084.1 + 51977 0.68 0.511126
Target:  5'- aCGGCGACCAgUGggcguuCGAACugaaGCCGCGGg- -3'
miRNA:   3'- -GUCGCUGGUgAC------GCUUG----UGGCGUCgu -5'
16400 5' -56.9 NC_004084.1 + 46820 0.68 0.499728
Target:  5'- -cGCGACCugcgacaACUGCGGcgACACCGUucAGUg -3'
miRNA:   3'- guCGCUGG-------UGACGCU--UGUGGCG--UCGu -5'
16400 5' -56.9 NC_004084.1 + 51431 0.77 0.141256
Target:  5'- gGGCGACaCGCUgaucuacguugGCGAGgGCCGCGGCGg -3'
miRNA:   3'- gUCGCUG-GUGA-----------CGCUUgUGGCGUCGU- -5'
16400 5' -56.9 NC_004084.1 + 2544 0.74 0.229093
Target:  5'- gGGUGGCCGCUGCGGACcucuuCCGCGa-- -3'
miRNA:   3'- gUCGCUGGUGACGCUUGu----GGCGUcgu -5'
16400 5' -56.9 NC_004084.1 + 57502 0.73 0.247598
Target:  5'- cCAGCaGGCCGCaGCGAacuccgacgACGCCGaCAGCGa -3'
miRNA:   3'- -GUCG-CUGGUGaCGCU---------UGUGGC-GUCGU- -5'
16400 5' -56.9 NC_004084.1 + 22142 0.71 0.334076
Target:  5'- aAGCGAUgACUgaccGCGAGCGCCuCGGCGc -3'
miRNA:   3'- gUCGCUGgUGA----CGCUUGUGGcGUCGU- -5'
16400 5' -56.9 NC_004084.1 + 29067 0.7 0.367436
Target:  5'- -cGCGACCGCccgcucggggGCGucguCGCCGCGGUAg -3'
miRNA:   3'- guCGCUGGUGa---------CGCuu--GUGGCGUCGU- -5'
16400 5' -56.9 NC_004084.1 + 54182 0.69 0.418786
Target:  5'- aGGCGACCACgucggGUGGGgaacgaucugugguCACUGCGGUAa -3'
miRNA:   3'- gUCGCUGGUGa----CGCUU--------------GUGGCGUCGU- -5'
16400 5' -56.9 NC_004084.1 + 55985 0.69 0.421607
Target:  5'- gGGCuGAUCGCcgaugGCGAGCAUCGCuGGCGa -3'
miRNA:   3'- gUCG-CUGGUGa----CGCUUGUGGCG-UCGU- -5'
16400 5' -56.9 NC_004084.1 + 28670 0.76 0.157628
Target:  5'- aAGaCGACCACUGCGu---CCGUAGCAg -3'
miRNA:   3'- gUC-GCUGGUGACGCuuguGGCGUCGU- -5'
16400 5' -56.9 NC_004084.1 + 39939 0.66 0.629465
Target:  5'- uCAGCGugCu---CGAcgGCGCCGCGGCc -3'
miRNA:   3'- -GUCGCugGugacGCU--UGUGGCGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.