miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16401 3' -57.1 NC_004084.1 + 39611 0.66 0.714662
Target:  5'- ----gGACGUgGCCGGCGAcGUccucGACGa -3'
miRNA:   3'- ccuugCUGCAgCGGCCGCU-CAc---CUGC- -5'
16401 3' -57.1 NC_004084.1 + 27815 0.66 0.714662
Target:  5'- gGGAugGACaUCGaCCGcggcguccGCGAGgucacGGACGa -3'
miRNA:   3'- -CCUugCUGcAGC-GGC--------CGCUCa----CCUGC- -5'
16401 3' -57.1 NC_004084.1 + 10078 0.66 0.714662
Target:  5'- cGGAGaucuucguCGACGUCGUCGGCcAGU--ACGg -3'
miRNA:   3'- -CCUU--------GCUGCAGCGGCCGcUCAccUGC- -5'
16401 3' -57.1 NC_004084.1 + 35896 0.66 0.714662
Target:  5'- cGGucgGACGUCccgcuggagugGCCGcGuCGAGUGGACu -3'
miRNA:   3'- -CCuugCUGCAG-----------CGGC-C-GCUCACCUGc -5'
16401 3' -57.1 NC_004084.1 + 26760 0.66 0.712599
Target:  5'- -cGACGAUGUCGCCuccucucagaccGCGA-UGGACGc -3'
miRNA:   3'- ccUUGCUGCAGCGGc-----------CGCUcACCUGC- -5'
16401 3' -57.1 NC_004084.1 + 47355 0.66 0.708462
Target:  5'- uGGACGuCGUcgaccucguaguaggCGCCGGCGAGccGGuCGu -3'
miRNA:   3'- cCUUGCuGCA---------------GCGGCCGCUCa-CCuGC- -5'
16401 3' -57.1 NC_004084.1 + 26860 0.66 0.683433
Target:  5'- aGAGCGACGUUGC--GUGGG-GGAUGa -3'
miRNA:   3'- cCUUGCUGCAGCGgcCGCUCaCCUGC- -5'
16401 3' -57.1 NC_004084.1 + 47383 0.66 0.683433
Target:  5'- --cGCGuCGUCGaCGGCGAGcuccaGGGCGc -3'
miRNA:   3'- ccuUGCuGCAGCgGCCGCUCa----CCUGC- -5'
16401 3' -57.1 NC_004084.1 + 42738 0.66 0.67292
Target:  5'- cGGGAgGACGUCGUCGGacugcgccgcCGAcUGGAa- -3'
miRNA:   3'- -CCUUgCUGCAGCGGCC----------GCUcACCUgc -5'
16401 3' -57.1 NC_004084.1 + 3174 0.66 0.67292
Target:  5'- -aGACGuCGUCGaCGGCGA--GGACGu -3'
miRNA:   3'- ccUUGCuGCAGCgGCCGCUcaCCUGC- -5'
16401 3' -57.1 NC_004084.1 + 39792 0.66 0.67292
Target:  5'- -cGACGGCGUCGUCgccgucacuGGCGGGUucGGuCGa -3'
miRNA:   3'- ccUUGCUGCAGCGG---------CCGCUCA--CCuGC- -5'
16401 3' -57.1 NC_004084.1 + 47082 0.67 0.656027
Target:  5'- gGGAGCGAUGUcuaaucccgacaaccCGCCGGuCGgcaccugcauccGGUGcGACGc -3'
miRNA:   3'- -CCUUGCUGCA---------------GCGGCC-GC------------UCAC-CUGC- -5'
16401 3' -57.1 NC_004084.1 + 44490 0.67 0.651794
Target:  5'- cGGAACGG-GUUGCCGagccagccGCGcucGUGGACa -3'
miRNA:   3'- -CCUUGCUgCAGCGGC--------CGCu--CACCUGc -5'
16401 3' -57.1 NC_004084.1 + 57844 0.67 0.651794
Target:  5'- -cGACGGCGUCGUgGuaGGuGUGGAUGu -3'
miRNA:   3'- ccUUGCUGCAGCGgCcgCU-CACCUGC- -5'
16401 3' -57.1 NC_004084.1 + 237 0.67 0.651794
Target:  5'- cGAGCGAUGcacgcaGCCGGCGAa-GGGCu -3'
miRNA:   3'- cCUUGCUGCag----CGGCCGCUcaCCUGc -5'
16401 3' -57.1 NC_004084.1 + 54858 0.67 0.651794
Target:  5'- aGGGCGAUcaguagCGCUGGCGGGgguUGGGCu -3'
miRNA:   3'- cCUUGCUGca----GCGGCCGCUC---ACCUGc -5'
16401 3' -57.1 NC_004084.1 + 52582 0.67 0.630602
Target:  5'- aGGAcugcgGCGGCGUgGuCCGGUGGGUcGaGGCa -3'
miRNA:   3'- -CCU-----UGCUGCAgC-GGCCGCUCA-C-CUGc -5'
16401 3' -57.1 NC_004084.1 + 1913 0.67 0.626362
Target:  5'- aGGAgccacaccgugaacGCGGCGUCGUcgccgguCGGCGAGUucgccGGAUc -3'
miRNA:   3'- -CCU--------------UGCUGCAGCG-------GCCGCUCA-----CCUGc -5'
16401 3' -57.1 NC_004084.1 + 20856 0.67 0.620003
Target:  5'- aGGGugGcACGUcgaccgCGCCGGCGA-UGGAa- -3'
miRNA:   3'- -CCUugC-UGCA------GCGGCCGCUcACCUgc -5'
16401 3' -57.1 NC_004084.1 + 4256 0.67 0.620003
Target:  5'- cGGAGCGaucaGCGcCGUCGGCGAGguuGAgGu -3'
miRNA:   3'- -CCUUGC----UGCaGCGGCCGCUCac-CUgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.