miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16401 3' -57.1 NC_004084.1 + 20856 0.67 0.620003
Target:  5'- aGGGugGcACGUcgaccgCGCCGGCGA-UGGAa- -3'
miRNA:   3'- -CCUugC-UGCA------GCGGCCGCUcACCUgc -5'
16401 3' -57.1 NC_004084.1 + 30408 0.67 0.618944
Target:  5'- uGGAGcCGACGUCGacgggCGGCGAcggaagcgauggcGaGGACGa -3'
miRNA:   3'- -CCUU-GCUGCAGCg----GCCGCU-------------CaCCUGC- -5'
16401 3' -57.1 NC_004084.1 + 21814 0.67 0.609414
Target:  5'- -cAACGucaGCGUCGaCGGUGAGgcgcUGGACGa -3'
miRNA:   3'- ccUUGC---UGCAGCgGCCGCUC----ACCUGC- -5'
16401 3' -57.1 NC_004084.1 + 47242 0.67 0.598844
Target:  5'- uGGAACGaACGauacgaccggcUCGCCGGCGccuacuacgaGGUcGACGa -3'
miRNA:   3'- -CCUUGC-UGC-----------AGCGGCCGC----------UCAcCUGC- -5'
16401 3' -57.1 NC_004084.1 + 47033 0.67 0.598844
Target:  5'- -cGAUGACGaUGCCGGgGAGUgcccGGACu -3'
miRNA:   3'- ccUUGCUGCaGCGGCCgCUCA----CCUGc -5'
16401 3' -57.1 NC_004084.1 + 36423 0.67 0.598844
Target:  5'- ---uCGAUGUCGuuGGUGAGUucGACGa -3'
miRNA:   3'- ccuuGCUGCAGCggCCGCUCAc-CUGC- -5'
16401 3' -57.1 NC_004084.1 + 17056 0.68 0.592514
Target:  5'- uGGGcCGACGcgaUCGaggucuugcaguggcCCGGCGAGUgcGGGCGa -3'
miRNA:   3'- -CCUuGCUGC---AGC---------------GGCCGCUCA--CCUGC- -5'
16401 3' -57.1 NC_004084.1 + 9472 0.68 0.567321
Target:  5'- cGAcACGACGUC-CUGGaCGGGacgGGACGg -3'
miRNA:   3'- cCU-UGCUGCAGcGGCC-GCUCa--CCUGC- -5'
16401 3' -57.1 NC_004084.1 + 17238 0.68 0.567321
Target:  5'- ---uCGACGUCGCCGGCGAucguccccaucaGUGaACc -3'
miRNA:   3'- ccuuGCUGCAGCGGCCGCU------------CACcUGc -5'
16401 3' -57.1 NC_004084.1 + 32372 0.68 0.567321
Target:  5'- -cGACGaucGCGUUGUCGGUGAGcacgcccagguUGGGCGg -3'
miRNA:   3'- ccUUGC---UGCAGCGGCCGCUC-----------ACCUGC- -5'
16401 3' -57.1 NC_004084.1 + 5323 0.68 0.567321
Target:  5'- aGGGcCGAcucgaagaucaCGUCGCCgagcgggcGGCGAGgacugGGACGa -3'
miRNA:   3'- -CCUuGCU-----------GCAGCGG--------CCGCUCa----CCUGC- -5'
16401 3' -57.1 NC_004084.1 + 3765 0.68 0.556901
Target:  5'- aGGAGaaauacuuCGGCGUCGCUGGCGAucGGuACc -3'
miRNA:   3'- -CCUU--------GCUGCAGCGGCCGCUcaCC-UGc -5'
16401 3' -57.1 NC_004084.1 + 53552 0.68 0.556901
Target:  5'- gGGAACGAgGUCGuCCuGCuuGUGGAgGu -3'
miRNA:   3'- -CCUUGCUgCAGC-GGcCGcuCACCUgC- -5'
16401 3' -57.1 NC_004084.1 + 28657 0.69 0.530086
Target:  5'- gGGGACGACcuacCGCCGcaGCGAGcucaacgucgagcacUGGGCGg -3'
miRNA:   3'- -CCUUGCUGca--GCGGC--CGCUC---------------ACCUGC- -5'
16401 3' -57.1 NC_004084.1 + 50667 0.69 0.519897
Target:  5'- uGAAUGACGagcgcguucagcagcUCGCCaGCGAGgcgaaGGACGu -3'
miRNA:   3'- cCUUGCUGC---------------AGCGGcCGCUCa----CCUGC- -5'
16401 3' -57.1 NC_004084.1 + 1589 0.69 0.515842
Target:  5'- aGGACGACGUCGCCcGGCug--GGAg- -3'
miRNA:   3'- cCUUGCUGCAGCGG-CCGcucaCCUgc -5'
16401 3' -57.1 NC_004084.1 + 4297 0.69 0.515842
Target:  5'- --cACGACGUccCGCCGGUGAucGcGGGCGu -3'
miRNA:   3'- ccuUGCUGCA--GCGGCCGCU--CaCCUGC- -5'
16401 3' -57.1 NC_004084.1 + 41750 0.69 0.505764
Target:  5'- cGGGACGA---CGCCGGCGAcGaGGACc -3'
miRNA:   3'- -CCUUGCUgcaGCGGCCGCU-CaCCUGc -5'
16401 3' -57.1 NC_004084.1 + 28870 0.69 0.489817
Target:  5'- cGGGugGGCGuuccgcagcgagaucUCGCC-GCGGGUGG-CGa -3'
miRNA:   3'- -CCUugCUGC---------------AGCGGcCGCUCACCuGC- -5'
16401 3' -57.1 NC_004084.1 + 51710 0.69 0.485867
Target:  5'- cGGACgGACaUCGCCGGCGuugaccucgAGaUGGACGu -3'
miRNA:   3'- cCUUG-CUGcAGCGGCCGC---------UC-ACCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.