miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16401 3' -57.1 NC_004084.1 + 237 0.67 0.651794
Target:  5'- cGAGCGAUGcacgcaGCCGGCGAa-GGGCu -3'
miRNA:   3'- cCUUGCUGCag----CGGCCGCUcaCCUGc -5'
16401 3' -57.1 NC_004084.1 + 1589 0.69 0.515842
Target:  5'- aGGACGACGUCGCCcGGCug--GGAg- -3'
miRNA:   3'- cCUUGCUGCAGCGG-CCGcucaCCUgc -5'
16401 3' -57.1 NC_004084.1 + 1913 0.67 0.626362
Target:  5'- aGGAgccacaccgugaacGCGGCGUCGUcgccgguCGGCGAGUucgccGGAUc -3'
miRNA:   3'- -CCU--------------UGCUGCAGCG-------GCCGCUCA-----CCUGc -5'
16401 3' -57.1 NC_004084.1 + 3174 0.66 0.67292
Target:  5'- -aGACGuCGUCGaCGGCGA--GGACGu -3'
miRNA:   3'- ccUUGCuGCAGCgGCCGCUcaCCUGC- -5'
16401 3' -57.1 NC_004084.1 + 3482 0.7 0.475084
Target:  5'- cGGAACGGCGUucgacgucgacagUGCUGGCcagcaucaugGAGUGGugACGa -3'
miRNA:   3'- -CCUUGCUGCA-------------GCGGCCG----------CUCACC--UGC- -5'
16401 3' -57.1 NC_004084.1 + 3765 0.68 0.556901
Target:  5'- aGGAGaaauacuuCGGCGUCGCUGGCGAucGGuACc -3'
miRNA:   3'- -CCUU--------GCUGCAGCGGCCGCUcaCC-UGc -5'
16401 3' -57.1 NC_004084.1 + 4256 0.67 0.620003
Target:  5'- cGGAGCGaucaGCGcCGUCGGCGAGguuGAgGu -3'
miRNA:   3'- -CCUUGC----UGCaGCGGCCGCUCac-CUgC- -5'
16401 3' -57.1 NC_004084.1 + 4297 0.69 0.515842
Target:  5'- --cACGACGUccCGCCGGUGAucGcGGGCGu -3'
miRNA:   3'- ccuUGCUGCA--GCGGCCGCU--CaCCUGC- -5'
16401 3' -57.1 NC_004084.1 + 4947 0.7 0.456745
Target:  5'- uGGAUGACGUcCGCCGG-GAGacGACGa -3'
miRNA:   3'- cCUUGCUGCA-GCGGCCgCUCacCUGC- -5'
16401 3' -57.1 NC_004084.1 + 5323 0.68 0.567321
Target:  5'- aGGGcCGAcucgaagaucaCGUCGCCgagcgggcGGCGAGgacugGGACGa -3'
miRNA:   3'- -CCUuGCU-----------GCAGCGG--------CCGCUCa----CCUGC- -5'
16401 3' -57.1 NC_004084.1 + 7958 0.71 0.391817
Target:  5'- cGAACGACacCGCCgaccgcaggacgaGGCGAGUGGAaCGa -3'
miRNA:   3'- cCUUGCUGcaGCGG-------------CCGCUCACCU-GC- -5'
16401 3' -57.1 NC_004084.1 + 9138 0.7 0.462496
Target:  5'- cGGAACGccuucgacuucgcCGUCGCC-GUGAcGUGGACGu -3'
miRNA:   3'- -CCUUGCu------------GCAGCGGcCGCU-CACCUGC- -5'
16401 3' -57.1 NC_004084.1 + 9472 0.68 0.567321
Target:  5'- cGAcACGACGUC-CUGGaCGGGacgGGACGg -3'
miRNA:   3'- cCU-UGCUGCAGcGGCC-GCUCa--CCUGC- -5'
16401 3' -57.1 NC_004084.1 + 10078 0.66 0.714662
Target:  5'- cGGAGaucuucguCGACGUCGUCGGCcAGU--ACGg -3'
miRNA:   3'- -CCUU--------GCUGCAGCGGCCGcUCAccUGC- -5'
16401 3' -57.1 NC_004084.1 + 10523 0.71 0.418522
Target:  5'- cGGAGCGAccgucgaCGUUGCCGaGCcAGcGGACGa -3'
miRNA:   3'- -CCUUGCU-------GCAGCGGC-CGcUCaCCUGC- -5'
16401 3' -57.1 NC_004084.1 + 11723 0.74 0.250576
Target:  5'- cGGua-GACGUCGCCGGCGAcGUGcuCGa -3'
miRNA:   3'- -CCuugCUGCAGCGGCCGCU-CACcuGC- -5'
16401 3' -57.1 NC_004084.1 + 16663 0.71 0.413994
Target:  5'- cGGGAgGuccuCGUCGCCGGCGucGUcccgaucgucauccgGGACGa -3'
miRNA:   3'- -CCUUgCu---GCAGCGGCCGCu-CA---------------CCUGC- -5'
16401 3' -57.1 NC_004084.1 + 17056 0.68 0.592514
Target:  5'- uGGGcCGACGcgaUCGaggucuugcaguggcCCGGCGAGUgcGGGCGa -3'
miRNA:   3'- -CCUuGCUGC---AGC---------------GGCCGCUCA--CCUGC- -5'
16401 3' -57.1 NC_004084.1 + 17158 0.73 0.311924
Target:  5'- gGGAcgaucgccgGCGACGUCGaaGGCGAG-GGAgGc -3'
miRNA:   3'- -CCU---------UGCUGCAGCggCCGCUCaCCUgC- -5'
16401 3' -57.1 NC_004084.1 + 17238 0.68 0.567321
Target:  5'- ---uCGACGUCGCCGGCGAucguccccaucaGUGaACc -3'
miRNA:   3'- ccuuGCUGCAGCGGCCGCU------------CACcUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.