miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16401 3' -57.1 NC_004084.1 + 18143 1.11 0.000719
Target:  5'- uGGAACGACGUCGCCGGCGAGUGGACGa -3'
miRNA:   3'- -CCUUGCUGCAGCGGCCGCUCACCUGC- -5'
16401 3' -57.1 NC_004084.1 + 18809 0.7 0.456745
Target:  5'- -cGAgGACGUCGCCGGCcacguccaGGaGGACGg -3'
miRNA:   3'- ccUUgCUGCAGCGGCCGc-------UCaCCUGC- -5'
16401 3' -57.1 NC_004084.1 + 20856 0.67 0.620003
Target:  5'- aGGGugGcACGUcgaccgCGCCGGCGA-UGGAa- -3'
miRNA:   3'- -CCUugC-UGCA------GCGGCCGCUcACCUgc -5'
16401 3' -57.1 NC_004084.1 + 21814 0.67 0.609414
Target:  5'- -cAACGucaGCGUCGaCGGUGAGgcgcUGGACGa -3'
miRNA:   3'- ccUUGC---UGCAGCgGCCGCUC----ACCUGC- -5'
16401 3' -57.1 NC_004084.1 + 22591 0.72 0.350658
Target:  5'- --cACGACGUCGCCGaCGAGacGGugGu -3'
miRNA:   3'- ccuUGCUGCAGCGGCcGCUCa-CCugC- -5'
16401 3' -57.1 NC_004084.1 + 22706 0.7 0.43786
Target:  5'- uGGAugGAuCGUC-CCGGCGAGcgacccGACGa -3'
miRNA:   3'- -CCUugCU-GCAGcGGCCGCUCac----CUGC- -5'
16401 3' -57.1 NC_004084.1 + 23063 0.81 0.094544
Target:  5'- --cGCGAuCGUCGCCGGCGAcgcgacgagGUGGACGu -3'
miRNA:   3'- ccuUGCU-GCAGCGGCCGCU---------CACCUGC- -5'
16401 3' -57.1 NC_004084.1 + 26760 0.66 0.712599
Target:  5'- -cGACGAUGUCGCCuccucucagaccGCGA-UGGACGc -3'
miRNA:   3'- ccUUGCUGCAGCGGc-----------CGCUcACCUGC- -5'
16401 3' -57.1 NC_004084.1 + 26860 0.66 0.683433
Target:  5'- aGAGCGACGUUGC--GUGGG-GGAUGa -3'
miRNA:   3'- cCUUGCUGCAGCGgcCGCUCaCCUGC- -5'
16401 3' -57.1 NC_004084.1 + 27815 0.66 0.714662
Target:  5'- gGGAugGACaUCGaCCGcggcguccGCGAGgucacGGACGa -3'
miRNA:   3'- -CCUugCUGcAGC-GGC--------CGCUCa----CCUGC- -5'
16401 3' -57.1 NC_004084.1 + 28657 0.69 0.530086
Target:  5'- gGGGACGACcuacCGCCGcaGCGAGcucaacgucgagcacUGGGCGg -3'
miRNA:   3'- -CCUUGCUGca--GCGGC--CGCUC---------------ACCUGC- -5'
16401 3' -57.1 NC_004084.1 + 28870 0.69 0.489817
Target:  5'- cGGGugGGCGuuccgcagcgagaucUCGCC-GCGGGUGG-CGa -3'
miRNA:   3'- -CCUugCUGC---------------AGCGGcCGCUCACCuGC- -5'
16401 3' -57.1 NC_004084.1 + 30112 0.7 0.428587
Target:  5'- ----gGACGUCGCUGGgGAGcGGGCc -3'
miRNA:   3'- ccuugCUGCAGCGGCCgCUCaCCUGc -5'
16401 3' -57.1 NC_004084.1 + 30408 0.67 0.618944
Target:  5'- uGGAGcCGACGUCGacgggCGGCGAcggaagcgauggcGaGGACGa -3'
miRNA:   3'- -CCUU-GCUGCAGCg----GCCGCU-------------CaCCUGC- -5'
16401 3' -57.1 NC_004084.1 + 32372 0.68 0.567321
Target:  5'- -cGACGaucGCGUUGUCGGUGAGcacgcccagguUGGGCGg -3'
miRNA:   3'- ccUUGC---UGCAGCGGCCGCUC-----------ACCUGC- -5'
16401 3' -57.1 NC_004084.1 + 35896 0.66 0.714662
Target:  5'- cGGucgGACGUCccgcuggagugGCCGcGuCGAGUGGACu -3'
miRNA:   3'- -CCuugCUGCAG-----------CGGC-C-GCUCACCUGc -5'
16401 3' -57.1 NC_004084.1 + 36080 0.71 0.392689
Target:  5'- aGGAccgcgACGAgGUCGCCGucuccuaCGAGUGGcACGg -3'
miRNA:   3'- -CCU-----UGCUgCAGCGGCc------GCUCACC-UGC- -5'
16401 3' -57.1 NC_004084.1 + 36423 0.67 0.598844
Target:  5'- ---uCGAUGUCGuuGGUGAGUucGACGa -3'
miRNA:   3'- ccuuGCUGCAGCggCCGCUCAc-CUGC- -5'
16401 3' -57.1 NC_004084.1 + 39611 0.66 0.714662
Target:  5'- ----gGACGUgGCCGGCGAcGUccucGACGa -3'
miRNA:   3'- ccuugCUGCAgCGGCCGCU-CAc---CUGC- -5'
16401 3' -57.1 NC_004084.1 + 39792 0.66 0.67292
Target:  5'- -cGACGGCGUCGUCgccgucacuGGCGGGUucGGuCGa -3'
miRNA:   3'- ccUUGCUGCAGCGG---------CCGCUCA--CCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.