Results 41 - 60 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16401 | 3' | -57.1 | NC_004084.1 | + | 40728 | 0.7 | 0.476059 |
Target: 5'- uGGAuCGugGUCGaCUGGCGGaaGGGCa -3' miRNA: 3'- -CCUuGCugCAGC-GGCCGCUcaCCUGc -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 41750 | 0.69 | 0.505764 |
Target: 5'- cGGGACGA---CGCCGGCGAcGaGGACc -3' miRNA: 3'- -CCUUGCUgcaGCGGCCGCU-CaCCUGc -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 41837 | 0.7 | 0.46635 |
Target: 5'- gGGggUGACGagGCCgauGGUGAGUGaguccGACGa -3' miRNA: 3'- -CCuuGCUGCagCGG---CCGCUCAC-----CUGC- -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 42738 | 0.66 | 0.67292 |
Target: 5'- cGGGAgGACGUCGUCGGacugcgccgcCGAcUGGAa- -3' miRNA: 3'- -CCUUgCUGCAGCGGCC----------GCUcACCUgc -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 44490 | 0.67 | 0.651794 |
Target: 5'- cGGAACGG-GUUGCCGagccagccGCGcucGUGGACa -3' miRNA: 3'- -CCUUGCUgCAGCGGC--------CGCu--CACCUGc -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 44957 | 0.78 | 0.153661 |
Target: 5'- aGAACGGCGuUCGUC-GCGAGUGGACc -3' miRNA: 3'- cCUUGCUGC-AGCGGcCGCUCACCUGc -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 46497 | 0.75 | 0.221 |
Target: 5'- uGGucGCGACGUCGCCGGUcgccGAGUuGAUGa -3' miRNA: 3'- -CCu-UGCUGCAGCGGCCG----CUCAcCUGC- -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 46693 | 0.76 | 0.217659 |
Target: 5'- cGAGC-ACGUCGCCGGCGAcgucuaccgcgacgaGUGGuCGg -3' miRNA: 3'- cCUUGcUGCAGCGGCCGCU---------------CACCuGC- -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 47033 | 0.67 | 0.598844 |
Target: 5'- -cGAUGACGaUGCCGGgGAGUgcccGGACu -3' miRNA: 3'- ccUUGCUGCaGCGGCCgCUCA----CCUGc -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 47082 | 0.67 | 0.656027 |
Target: 5'- gGGAGCGAUGUcuaaucccgacaaccCGCCGGuCGgcaccugcauccGGUGcGACGc -3' miRNA: 3'- -CCUUGCUGCA---------------GCGGCC-GC------------UCAC-CUGC- -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 47242 | 0.67 | 0.598844 |
Target: 5'- uGGAACGaACGauacgaccggcUCGCCGGCGccuacuacgaGGUcGACGa -3' miRNA: 3'- -CCUUGC-UGC-----------AGCGGCCGC----------UCAcCUGC- -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 47355 | 0.66 | 0.708462 |
Target: 5'- uGGACGuCGUcgaccucguaguaggCGCCGGCGAGccGGuCGu -3' miRNA: 3'- cCUUGCuGCA---------------GCGGCCGCUCa-CCuGC- -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 47383 | 0.66 | 0.683433 |
Target: 5'- --cGCGuCGUCGaCGGCGAGcuccaGGGCGc -3' miRNA: 3'- ccuUGCuGCAGCgGCCGCUCa----CCUGC- -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 48564 | 0.67 | 0.620003 |
Target: 5'- aGAGugaGACGUgCGUCGGCGGGUcGGAg- -3' miRNA: 3'- cCUUg--CUGCA-GCGGCCGCUCA-CCUgc -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 49852 | 0.71 | 0.40148 |
Target: 5'- ---uCGACGUCGCgagcgagaucCGGCGAGUccugcgGGACGa -3' miRNA: 3'- ccuuGCUGCAGCG----------GCCGCUCA------CCUGC- -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 50667 | 0.69 | 0.519897 |
Target: 5'- uGAAUGACGagcgcguucagcagcUCGCCaGCGAGgcgaaGGACGu -3' miRNA: 3'- cCUUGCUGC---------------AGCGGcCGCUCa----CCUGC- -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 51710 | 0.69 | 0.485867 |
Target: 5'- cGGACgGACaUCGCCGGCGuugaccucgAGaUGGACGu -3' miRNA: 3'- cCUUG-CUGcAGCGGCCGC---------UC-ACCUGC- -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 52582 | 0.67 | 0.630602 |
Target: 5'- aGGAcugcgGCGGCGUgGuCCGGUGGGUcGaGGCa -3' miRNA: 3'- -CCU-----UGCUGCAgC-GGCCGCUCA-C-CUGc -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 53104 | 0.7 | 0.43786 |
Target: 5'- aGGAGgcacuCGACGgaGCCGcCGAGUGGAUGg -3' miRNA: 3'- -CCUU-----GCUGCagCGGCcGCUCACCUGC- -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 53552 | 0.68 | 0.556901 |
Target: 5'- gGGAACGAgGUCGuCCuGCuuGUGGAgGu -3' miRNA: 3'- -CCUUGCUgCAGC-GGcCGcuCACCUgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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