miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16401 3' -57.1 NC_004084.1 + 57844 0.67 0.651794
Target:  5'- -cGACGGCGUCGUgGuaGGuGUGGAUGu -3'
miRNA:   3'- ccUUGCUGCAGCGgCcgCU-CACCUGC- -5'
16401 3' -57.1 NC_004084.1 + 57411 0.82 0.075629
Target:  5'- ---uCGACGUCGCCGGCGAgcucgagGUGGACa -3'
miRNA:   3'- ccuuGCUGCAGCGGCCGCU-------CACCUGc -5'
16401 3' -57.1 NC_004084.1 + 55901 0.73 0.290286
Target:  5'- -cGACGACGaucCGCCGGagGAGUGGGCc -3'
miRNA:   3'- ccUUGCUGCa--GCGGCCg-CUCACCUGc -5'
16401 3' -57.1 NC_004084.1 + 54858 0.67 0.651794
Target:  5'- aGGGCGAUcaguagCGCUGGCGGGgguUGGGCu -3'
miRNA:   3'- cCUUGCUGca----GCGGCCGCUC---ACCUGc -5'
16401 3' -57.1 NC_004084.1 + 53552 0.68 0.556901
Target:  5'- gGGAACGAgGUCGuCCuGCuuGUGGAgGu -3'
miRNA:   3'- -CCUUGCUgCAGC-GGcCGcuCACCUgC- -5'
16401 3' -57.1 NC_004084.1 + 53104 0.7 0.43786
Target:  5'- aGGAGgcacuCGACGgaGCCGcCGAGUGGAUGg -3'
miRNA:   3'- -CCUU-----GCUGCagCGGCcGCUCACCUGC- -5'
16401 3' -57.1 NC_004084.1 + 52582 0.67 0.630602
Target:  5'- aGGAcugcgGCGGCGUgGuCCGGUGGGUcGaGGCa -3'
miRNA:   3'- -CCU-----UGCUGCAgC-GGCCGCUCA-C-CUGc -5'
16401 3' -57.1 NC_004084.1 + 51710 0.69 0.485867
Target:  5'- cGGACgGACaUCGCCGGCGuugaccucgAGaUGGACGu -3'
miRNA:   3'- cCUUG-CUGcAGCGGCCGC---------UC-ACCUGC- -5'
16401 3' -57.1 NC_004084.1 + 50667 0.69 0.519897
Target:  5'- uGAAUGACGagcgcguucagcagcUCGCCaGCGAGgcgaaGGACGu -3'
miRNA:   3'- cCUUGCUGC---------------AGCGGcCGCUCa----CCUGC- -5'
16401 3' -57.1 NC_004084.1 + 49852 0.71 0.40148
Target:  5'- ---uCGACGUCGCgagcgagaucCGGCGAGUccugcgGGACGa -3'
miRNA:   3'- ccuuGCUGCAGCG----------GCCGCUCA------CCUGC- -5'
16401 3' -57.1 NC_004084.1 + 48564 0.67 0.620003
Target:  5'- aGAGugaGACGUgCGUCGGCGGGUcGGAg- -3'
miRNA:   3'- cCUUg--CUGCA-GCGGCCGCUCA-CCUgc -5'
16401 3' -57.1 NC_004084.1 + 47383 0.66 0.683433
Target:  5'- --cGCGuCGUCGaCGGCGAGcuccaGGGCGc -3'
miRNA:   3'- ccuUGCuGCAGCgGCCGCUCa----CCUGC- -5'
16401 3' -57.1 NC_004084.1 + 47355 0.66 0.708462
Target:  5'- uGGACGuCGUcgaccucguaguaggCGCCGGCGAGccGGuCGu -3'
miRNA:   3'- cCUUGCuGCA---------------GCGGCCGCUCa-CCuGC- -5'
16401 3' -57.1 NC_004084.1 + 47242 0.67 0.598844
Target:  5'- uGGAACGaACGauacgaccggcUCGCCGGCGccuacuacgaGGUcGACGa -3'
miRNA:   3'- -CCUUGC-UGC-----------AGCGGCCGC----------UCAcCUGC- -5'
16401 3' -57.1 NC_004084.1 + 47082 0.67 0.656027
Target:  5'- gGGAGCGAUGUcuaaucccgacaaccCGCCGGuCGgcaccugcauccGGUGcGACGc -3'
miRNA:   3'- -CCUUGCUGCA---------------GCGGCC-GC------------UCAC-CUGC- -5'
16401 3' -57.1 NC_004084.1 + 47033 0.67 0.598844
Target:  5'- -cGAUGACGaUGCCGGgGAGUgcccGGACu -3'
miRNA:   3'- ccUUGCUGCaGCGGCCgCUCA----CCUGc -5'
16401 3' -57.1 NC_004084.1 + 46693 0.76 0.217659
Target:  5'- cGAGC-ACGUCGCCGGCGAcgucuaccgcgacgaGUGGuCGg -3'
miRNA:   3'- cCUUGcUGCAGCGGCCGCU---------------CACCuGC- -5'
16401 3' -57.1 NC_004084.1 + 46497 0.75 0.221
Target:  5'- uGGucGCGACGUCGCCGGUcgccGAGUuGAUGa -3'
miRNA:   3'- -CCu-UGCUGCAGCGGCCG----CUCAcCUGC- -5'
16401 3' -57.1 NC_004084.1 + 44957 0.78 0.153661
Target:  5'- aGAACGGCGuUCGUC-GCGAGUGGACc -3'
miRNA:   3'- cCUUGCUGC-AGCGGcCGCUCACCUGc -5'
16401 3' -57.1 NC_004084.1 + 44490 0.67 0.651794
Target:  5'- cGGAACGG-GUUGCCGagccagccGCGcucGUGGACa -3'
miRNA:   3'- -CCUUGCUgCAGCGGC--------CGCu--CACCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.