miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16401 3' -57.1 NC_004084.1 + 5323 0.68 0.567321
Target:  5'- aGGGcCGAcucgaagaucaCGUCGCCgagcgggcGGCGAGgacugGGACGa -3'
miRNA:   3'- -CCUuGCU-----------GCAGCGG--------CCGCUCa----CCUGC- -5'
16401 3' -57.1 NC_004084.1 + 41837 0.7 0.46635
Target:  5'- gGGggUGACGagGCCgauGGUGAGUGaguccGACGa -3'
miRNA:   3'- -CCuuGCUGCagCGG---CCGCUCAC-----CUGC- -5'
16401 3' -57.1 NC_004084.1 + 40728 0.7 0.476059
Target:  5'- uGGAuCGugGUCGaCUGGCGGaaGGGCa -3'
miRNA:   3'- -CCUuGCugCAGC-GGCCGCUcaCCUGc -5'
16401 3' -57.1 NC_004084.1 + 51710 0.69 0.485867
Target:  5'- cGGACgGACaUCGCCGGCGuugaccucgAGaUGGACGu -3'
miRNA:   3'- cCUUG-CUGcAGCGGCCGC---------UC-ACCUGC- -5'
16401 3' -57.1 NC_004084.1 + 28870 0.69 0.489817
Target:  5'- cGGGugGGCGuuccgcagcgagaucUCGCC-GCGGGUGG-CGa -3'
miRNA:   3'- -CCUugCUGC---------------AGCGGcCGCUCACCuGC- -5'
16401 3' -57.1 NC_004084.1 + 41750 0.69 0.505764
Target:  5'- cGGGACGA---CGCCGGCGAcGaGGACc -3'
miRNA:   3'- -CCUUGCUgcaGCGGCCGCU-CaCCUGc -5'
16401 3' -57.1 NC_004084.1 + 4297 0.69 0.515842
Target:  5'- --cACGACGUccCGCCGGUGAucGcGGGCGu -3'
miRNA:   3'- ccuUGCUGCA--GCGGCCGCU--CaCCUGC- -5'
16401 3' -57.1 NC_004084.1 + 50667 0.69 0.519897
Target:  5'- uGAAUGACGagcgcguucagcagcUCGCCaGCGAGgcgaaGGACGu -3'
miRNA:   3'- cCUUGCUGC---------------AGCGGcCGCUCa----CCUGC- -5'
16401 3' -57.1 NC_004084.1 + 3765 0.68 0.556901
Target:  5'- aGGAGaaauacuuCGGCGUCGCUGGCGAucGGuACc -3'
miRNA:   3'- -CCUU--------GCUGCAGCGGCCGCUcaCC-UGc -5'
16401 3' -57.1 NC_004084.1 + 22706 0.7 0.43786
Target:  5'- uGGAugGAuCGUC-CCGGCGAGcgacccGACGa -3'
miRNA:   3'- -CCUugCU-GCAGcGGCCGCUCac----CUGC- -5'
16401 3' -57.1 NC_004084.1 + 53104 0.7 0.43786
Target:  5'- aGGAGgcacuCGACGgaGCCGcCGAGUGGAUGg -3'
miRNA:   3'- -CCUU-----GCUGCagCGGCcGCUCACCUGC- -5'
16401 3' -57.1 NC_004084.1 + 30112 0.7 0.428587
Target:  5'- ----gGACGUCGCUGGgGAGcGGGCc -3'
miRNA:   3'- ccuugCUGCAGCGGCCgCUCaCCUGc -5'
16401 3' -57.1 NC_004084.1 + 57411 0.82 0.075629
Target:  5'- ---uCGACGUCGCCGGCGAgcucgagGUGGACa -3'
miRNA:   3'- ccuuGCUGCAGCGGCCGCU-------CACCUGc -5'
16401 3' -57.1 NC_004084.1 + 44957 0.78 0.153661
Target:  5'- aGAACGGCGuUCGUC-GCGAGUGGACc -3'
miRNA:   3'- cCUUGCUGC-AGCGGcCGCUCACCUGc -5'
16401 3' -57.1 NC_004084.1 + 46693 0.76 0.217659
Target:  5'- cGAGC-ACGUCGCCGGCGAcgucuaccgcgacgaGUGGuCGg -3'
miRNA:   3'- cCUUGcUGCAGCGGCCGCU---------------CACCuGC- -5'
16401 3' -57.1 NC_004084.1 + 17158 0.73 0.311924
Target:  5'- gGGAcgaucgccgGCGACGUCGaaGGCGAG-GGAgGc -3'
miRNA:   3'- -CCU---------UGCUGCAGCggCCGCUCaCCUgC- -5'
16401 3' -57.1 NC_004084.1 + 22591 0.72 0.350658
Target:  5'- --cACGACGUCGCCGaCGAGacGGugGu -3'
miRNA:   3'- ccuUGCUGCAGCGGCcGCUCa-CCugC- -5'
16401 3' -57.1 NC_004084.1 + 7958 0.71 0.391817
Target:  5'- cGAACGACacCGCCgaccgcaggacgaGGCGAGUGGAaCGa -3'
miRNA:   3'- cCUUGCUGcaGCGG-------------CCGCUCACCU-GC- -5'
16401 3' -57.1 NC_004084.1 + 36080 0.71 0.392689
Target:  5'- aGGAccgcgACGAgGUCGCCGucuccuaCGAGUGGcACGg -3'
miRNA:   3'- -CCU-----UGCUgCAGCGGCc------GCUCACC-UGC- -5'
16401 3' -57.1 NC_004084.1 + 49852 0.71 0.40148
Target:  5'- ---uCGACGUCGCgagcgagaucCGGCGAGUccugcgGGACGa -3'
miRNA:   3'- ccuuGCUGCAGCG----------GCCGCUCA------CCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.