Results 41 - 60 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16401 | 3' | -57.1 | NC_004084.1 | + | 9138 | 0.7 | 0.462496 |
Target: 5'- cGGAACGccuucgacuucgcCGUCGCC-GUGAcGUGGACGu -3' miRNA: 3'- -CCUUGCu------------GCAGCGGcCGCU-CACCUGC- -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 4947 | 0.7 | 0.456745 |
Target: 5'- uGGAUGACGUcCGCCGG-GAGacGACGa -3' miRNA: 3'- cCUUGCUGCA-GCGGCCgCUCacCUGC- -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 18809 | 0.7 | 0.456745 |
Target: 5'- -cGAgGACGUCGCCGGCcacguccaGGaGGACGg -3' miRNA: 3'- ccUUgCUGCAGCGGCCGc-------UCaCCUGC- -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 10523 | 0.71 | 0.418522 |
Target: 5'- cGGAGCGAccgucgaCGUUGCCGaGCcAGcGGACGa -3' miRNA: 3'- -CCUUGCU-------GCAGCGGC-CGcUCaCCUGC- -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 16663 | 0.71 | 0.413994 |
Target: 5'- cGGGAgGuccuCGUCGCCGGCGucGUcccgaucgucauccgGGACGa -3' miRNA: 3'- -CCUUgCu---GCAGCGGCCGCu-CA---------------CCUGC- -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 55901 | 0.73 | 0.290286 |
Target: 5'- -cGACGACGaucCGCCGGagGAGUGGGCc -3' miRNA: 3'- ccUUGCUGCa--GCGGCCg-CUCACCUGc -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 9472 | 0.68 | 0.567321 |
Target: 5'- cGAcACGACGUC-CUGGaCGGGacgGGACGg -3' miRNA: 3'- cCU-UGCUGCAGcGGCC-GCUCa--CCUGC- -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 17056 | 0.68 | 0.592514 |
Target: 5'- uGGGcCGACGcgaUCGaggucuugcaguggcCCGGCGAGUgcGGGCGa -3' miRNA: 3'- -CCUuGCUGC---AGC---------------GGCCGCUCA--CCUGC- -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 36423 | 0.67 | 0.598844 |
Target: 5'- ---uCGAUGUCGuuGGUGAGUucGACGa -3' miRNA: 3'- ccuuGCUGCAGCggCCGCUCAc-CUGC- -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 26760 | 0.66 | 0.712599 |
Target: 5'- -cGACGAUGUCGCCuccucucagaccGCGA-UGGACGc -3' miRNA: 3'- ccUUGCUGCAGCGGc-----------CGCUcACCUGC- -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 47355 | 0.66 | 0.708462 |
Target: 5'- uGGACGuCGUcgaccucguaguaggCGCCGGCGAGccGGuCGu -3' miRNA: 3'- cCUUGCuGCA---------------GCGGCCGCUCa-CCuGC- -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 26860 | 0.66 | 0.683433 |
Target: 5'- aGAGCGACGUUGC--GUGGG-GGAUGa -3' miRNA: 3'- cCUUGCUGCAGCGgcCGCUCaCCUGC- -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 42738 | 0.66 | 0.67292 |
Target: 5'- cGGGAgGACGUCGUCGGacugcgccgcCGAcUGGAa- -3' miRNA: 3'- -CCUUgCUGCAGCGGCC----------GCUcACCUgc -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 39792 | 0.66 | 0.67292 |
Target: 5'- -cGACGGCGUCGUCgccgucacuGGCGGGUucGGuCGa -3' miRNA: 3'- ccUUGCUGCAGCGG---------CCGCUCA--CCuGC- -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 44490 | 0.67 | 0.651794 |
Target: 5'- cGGAACGG-GUUGCCGagccagccGCGcucGUGGACa -3' miRNA: 3'- -CCUUGCUgCAGCGGC--------CGCu--CACCUGc -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 54858 | 0.67 | 0.651794 |
Target: 5'- aGGGCGAUcaguagCGCUGGCGGGgguUGGGCu -3' miRNA: 3'- cCUUGCUGca----GCGGCCGCUC---ACCUGc -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 57844 | 0.67 | 0.651794 |
Target: 5'- -cGACGGCGUCGUgGuaGGuGUGGAUGu -3' miRNA: 3'- ccUUGCUGCAGCGgCcgCU-CACCUGC- -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 1913 | 0.67 | 0.626362 |
Target: 5'- aGGAgccacaccgugaacGCGGCGUCGUcgccgguCGGCGAGUucgccGGAUc -3' miRNA: 3'- -CCU--------------UGCUGCAGCG-------GCCGCUCA-----CCUGc -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 4256 | 0.67 | 0.620003 |
Target: 5'- cGGAGCGaucaGCGcCGUCGGCGAGguuGAgGu -3' miRNA: 3'- -CCUUGC----UGCaGCGGCCGCUCac-CUgC- -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 48564 | 0.67 | 0.620003 |
Target: 5'- aGAGugaGACGUgCGUCGGCGGGUcGGAg- -3' miRNA: 3'- cCUUg--CUGCA-GCGGCCGCUCA-CCUgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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