miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16401 3' -57.1 NC_004084.1 + 10078 0.66 0.714662
Target:  5'- cGGAGaucuucguCGACGUCGUCGGCcAGU--ACGg -3'
miRNA:   3'- -CCUU--------GCUGCAGCGGCCGcUCAccUGC- -5'
16401 3' -57.1 NC_004084.1 + 53552 0.68 0.556901
Target:  5'- gGGAACGAgGUCGuCCuGCuuGUGGAgGu -3'
miRNA:   3'- -CCUUGCUgCAGC-GGcCGcuCACCUgC- -5'
16401 3' -57.1 NC_004084.1 + 1589 0.69 0.515842
Target:  5'- aGGACGACGUCGCCcGGCug--GGAg- -3'
miRNA:   3'- cCUUGCUGCAGCGG-CCGcucaCCUgc -5'
16401 3' -57.1 NC_004084.1 + 23063 0.81 0.094544
Target:  5'- --cGCGAuCGUCGCCGGCGAcgcgacgagGUGGACGu -3'
miRNA:   3'- ccuUGCU-GCAGCGGCCGCU---------CACCUGC- -5'
16401 3' -57.1 NC_004084.1 + 42738 0.66 0.67292
Target:  5'- cGGGAgGACGUCGUCGGacugcgccgcCGAcUGGAa- -3'
miRNA:   3'- -CCUUgCUGCAGCGGCC----------GCUcACCUgc -5'
16401 3' -57.1 NC_004084.1 + 39792 0.66 0.67292
Target:  5'- -cGACGGCGUCGUCgccgucacuGGCGGGUucGGuCGa -3'
miRNA:   3'- ccUUGCUGCAGCGG---------CCGCUCA--CCuGC- -5'
16401 3' -57.1 NC_004084.1 + 54858 0.67 0.651794
Target:  5'- aGGGCGAUcaguagCGCUGGCGGGgguUGGGCu -3'
miRNA:   3'- cCUUGCUGca----GCGGCCGCUC---ACCUGc -5'
16401 3' -57.1 NC_004084.1 + 57844 0.67 0.651794
Target:  5'- -cGACGGCGUCGUgGuaGGuGUGGAUGu -3'
miRNA:   3'- ccUUGCUGCAGCGgCcgCU-CACCUGC- -5'
16401 3' -57.1 NC_004084.1 + 48564 0.67 0.620003
Target:  5'- aGAGugaGACGUgCGUCGGCGGGUcGGAg- -3'
miRNA:   3'- cCUUg--CUGCA-GCGGCCGCUCA-CCUgc -5'
16401 3' -57.1 NC_004084.1 + 32372 0.68 0.567321
Target:  5'- -cGACGaucGCGUUGUCGGUGAGcacgcccagguUGGGCGg -3'
miRNA:   3'- ccUUGC---UGCAGCGGCCGCUC-----------ACCUGC- -5'
16401 3' -57.1 NC_004084.1 + 17056 0.68 0.592514
Target:  5'- uGGGcCGACGcgaUCGaggucuugcaguggcCCGGCGAGUgcGGGCGa -3'
miRNA:   3'- -CCUuGCUGC---AGC---------------GGCCGCUCA--CCUGC- -5'
16401 3' -57.1 NC_004084.1 + 4256 0.67 0.620003
Target:  5'- cGGAGCGaucaGCGcCGUCGGCGAGguuGAgGu -3'
miRNA:   3'- -CCUUGC----UGCaGCGGCCGCUCac-CUgC- -5'
16401 3' -57.1 NC_004084.1 + 26760 0.66 0.712599
Target:  5'- -cGACGAUGUCGCCuccucucagaccGCGA-UGGACGc -3'
miRNA:   3'- ccUUGCUGCAGCGGc-----------CGCUcACCUGC- -5'
16401 3' -57.1 NC_004084.1 + 9472 0.68 0.567321
Target:  5'- cGAcACGACGUC-CUGGaCGGGacgGGACGg -3'
miRNA:   3'- cCU-UGCUGCAGcGGCC-GCUCa--CCUGC- -5'
16401 3' -57.1 NC_004084.1 + 47355 0.66 0.708462
Target:  5'- uGGACGuCGUcgaccucguaguaggCGCCGGCGAGccGGuCGu -3'
miRNA:   3'- cCUUGCuGCA---------------GCGGCCGCUCa-CCuGC- -5'
16401 3' -57.1 NC_004084.1 + 1913 0.67 0.626362
Target:  5'- aGGAgccacaccgugaacGCGGCGUCGUcgccgguCGGCGAGUucgccGGAUc -3'
miRNA:   3'- -CCU--------------UGCUGCAGCG-------GCCGCUCA-----CCUGc -5'
16401 3' -57.1 NC_004084.1 + 17238 0.68 0.567321
Target:  5'- ---uCGACGUCGCCGGCGAucguccccaucaGUGaACc -3'
miRNA:   3'- ccuuGCUGCAGCGGCCGCU------------CACcUGc -5'
16401 3' -57.1 NC_004084.1 + 28657 0.69 0.530086
Target:  5'- gGGGACGACcuacCGCCGcaGCGAGcucaacgucgagcacUGGGCGg -3'
miRNA:   3'- -CCUUGCUGca--GCGGC--CGCUC---------------ACCUGC- -5'
16401 3' -57.1 NC_004084.1 + 26860 0.66 0.683433
Target:  5'- aGAGCGACGUUGC--GUGGG-GGAUGa -3'
miRNA:   3'- cCUUGCUGCAGCGgcCGCUCaCCUGC- -5'
16401 3' -57.1 NC_004084.1 + 44490 0.67 0.651794
Target:  5'- cGGAACGG-GUUGCCGagccagccGCGcucGUGGACa -3'
miRNA:   3'- -CCUUGCUgCAGCGGC--------CGCu--CACCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.