Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16401 | 3' | -57.1 | NC_004084.1 | + | 11723 | 0.74 | 0.250576 |
Target: 5'- cGGua-GACGUCGCCGGCGAcGUGcuCGa -3' miRNA: 3'- -CCuugCUGCAGCGGCCGCU-CACcuGC- -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 1589 | 0.69 | 0.515842 |
Target: 5'- aGGACGACGUCGCCcGGCug--GGAg- -3' miRNA: 3'- cCUUGCUGCAGCGG-CCGcucaCCUgc -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 1913 | 0.67 | 0.626362 |
Target: 5'- aGGAgccacaccgugaacGCGGCGUCGUcgccgguCGGCGAGUucgccGGAUc -3' miRNA: 3'- -CCU--------------UGCUGCAGCG-------GCCGCUCA-----CCUGc -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 18809 | 0.7 | 0.456745 |
Target: 5'- -cGAgGACGUCGCCGGCcacguccaGGaGGACGg -3' miRNA: 3'- ccUUgCUGCAGCGGCCGc-------UCaCCUGC- -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 46497 | 0.75 | 0.221 |
Target: 5'- uGGucGCGACGUCGCCGGUcgccGAGUuGAUGa -3' miRNA: 3'- -CCu-UGCUGCAGCGGCCG----CUCAcCUGC- -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 55901 | 0.73 | 0.290286 |
Target: 5'- -cGACGACGaucCGCCGGagGAGUGGGCc -3' miRNA: 3'- ccUUGCUGCa--GCGGCCg-CUCACCUGc -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 57844 | 0.67 | 0.651794 |
Target: 5'- -cGACGGCGUCGUgGuaGGuGUGGAUGu -3' miRNA: 3'- ccUUGCUGCAGCGgCcgCU-CACCUGC- -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 54858 | 0.67 | 0.651794 |
Target: 5'- aGGGCGAUcaguagCGCUGGCGGGgguUGGGCu -3' miRNA: 3'- cCUUGCUGca----GCGGCCGCUC---ACCUGc -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 48564 | 0.67 | 0.620003 |
Target: 5'- aGAGugaGACGUgCGUCGGCGGGUcGGAg- -3' miRNA: 3'- cCUUg--CUGCA-GCGGCCGCUCA-CCUgc -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 3482 | 0.7 | 0.475084 |
Target: 5'- cGGAACGGCGUucgacgucgacagUGCUGGCcagcaucaugGAGUGGugACGa -3' miRNA: 3'- -CCUUGCUGCA-------------GCGGCCG----------CUCACC--UGC- -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 7958 | 0.71 | 0.391817 |
Target: 5'- cGAACGACacCGCCgaccgcaggacgaGGCGAGUGGAaCGa -3' miRNA: 3'- cCUUGCUGcaGCGG-------------CCGCUCACCU-GC- -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 3174 | 0.66 | 0.67292 |
Target: 5'- -aGACGuCGUCGaCGGCGA--GGACGu -3' miRNA: 3'- ccUUGCuGCAGCgGCCGCUcaCCUGC- -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 51710 | 0.69 | 0.485867 |
Target: 5'- cGGACgGACaUCGCCGGCGuugaccucgAGaUGGACGu -3' miRNA: 3'- cCUUG-CUGcAGCGGCCGC---------UC-ACCUGC- -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 40728 | 0.7 | 0.476059 |
Target: 5'- uGGAuCGugGUCGaCUGGCGGaaGGGCa -3' miRNA: 3'- -CCUuGCugCAGC-GGCCGCUcaCCUGc -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 41837 | 0.7 | 0.46635 |
Target: 5'- gGGggUGACGagGCCgauGGUGAGUGaguccGACGa -3' miRNA: 3'- -CCuuGCUGCagCGG---CCGCUCAC-----CUGC- -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 30408 | 0.67 | 0.618944 |
Target: 5'- uGGAGcCGACGUCGacgggCGGCGAcggaagcgauggcGaGGACGa -3' miRNA: 3'- -CCUU-GCUGCAGCg----GCCGCU-------------CaCCUGC- -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 20856 | 0.67 | 0.620003 |
Target: 5'- aGGGugGcACGUcgaccgCGCCGGCGA-UGGAa- -3' miRNA: 3'- -CCUugC-UGCA------GCGGCCGCUcACCUgc -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 52582 | 0.67 | 0.630602 |
Target: 5'- aGGAcugcgGCGGCGUgGuCCGGUGGGUcGaGGCa -3' miRNA: 3'- -CCU-----UGCUGCAgC-GGCCGCUCA-C-CUGc -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 237 | 0.67 | 0.651794 |
Target: 5'- cGAGCGAUGcacgcaGCCGGCGAa-GGGCu -3' miRNA: 3'- cCUUGCUGCag----CGGCCGCUcaCCUGc -5' |
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16401 | 3' | -57.1 | NC_004084.1 | + | 47082 | 0.67 | 0.656027 |
Target: 5'- gGGAGCGAUGUcuaaucccgacaaccCGCCGGuCGgcaccugcauccGGUGcGACGc -3' miRNA: 3'- -CCUUGCUGCA---------------GCGGCC-GC------------UCAC-CUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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