miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16401 3' -57.1 NC_004084.1 + 11723 0.74 0.250576
Target:  5'- cGGua-GACGUCGCCGGCGAcGUGcuCGa -3'
miRNA:   3'- -CCuugCUGCAGCGGCCGCU-CACcuGC- -5'
16401 3' -57.1 NC_004084.1 + 1589 0.69 0.515842
Target:  5'- aGGACGACGUCGCCcGGCug--GGAg- -3'
miRNA:   3'- cCUUGCUGCAGCGG-CCGcucaCCUgc -5'
16401 3' -57.1 NC_004084.1 + 1913 0.67 0.626362
Target:  5'- aGGAgccacaccgugaacGCGGCGUCGUcgccgguCGGCGAGUucgccGGAUc -3'
miRNA:   3'- -CCU--------------UGCUGCAGCG-------GCCGCUCA-----CCUGc -5'
16401 3' -57.1 NC_004084.1 + 18809 0.7 0.456745
Target:  5'- -cGAgGACGUCGCCGGCcacguccaGGaGGACGg -3'
miRNA:   3'- ccUUgCUGCAGCGGCCGc-------UCaCCUGC- -5'
16401 3' -57.1 NC_004084.1 + 46497 0.75 0.221
Target:  5'- uGGucGCGACGUCGCCGGUcgccGAGUuGAUGa -3'
miRNA:   3'- -CCu-UGCUGCAGCGGCCG----CUCAcCUGC- -5'
16401 3' -57.1 NC_004084.1 + 55901 0.73 0.290286
Target:  5'- -cGACGACGaucCGCCGGagGAGUGGGCc -3'
miRNA:   3'- ccUUGCUGCa--GCGGCCg-CUCACCUGc -5'
16401 3' -57.1 NC_004084.1 + 57844 0.67 0.651794
Target:  5'- -cGACGGCGUCGUgGuaGGuGUGGAUGu -3'
miRNA:   3'- ccUUGCUGCAGCGgCcgCU-CACCUGC- -5'
16401 3' -57.1 NC_004084.1 + 54858 0.67 0.651794
Target:  5'- aGGGCGAUcaguagCGCUGGCGGGgguUGGGCu -3'
miRNA:   3'- cCUUGCUGca----GCGGCCGCUC---ACCUGc -5'
16401 3' -57.1 NC_004084.1 + 48564 0.67 0.620003
Target:  5'- aGAGugaGACGUgCGUCGGCGGGUcGGAg- -3'
miRNA:   3'- cCUUg--CUGCA-GCGGCCGCUCA-CCUgc -5'
16401 3' -57.1 NC_004084.1 + 3482 0.7 0.475084
Target:  5'- cGGAACGGCGUucgacgucgacagUGCUGGCcagcaucaugGAGUGGugACGa -3'
miRNA:   3'- -CCUUGCUGCA-------------GCGGCCG----------CUCACC--UGC- -5'
16401 3' -57.1 NC_004084.1 + 7958 0.71 0.391817
Target:  5'- cGAACGACacCGCCgaccgcaggacgaGGCGAGUGGAaCGa -3'
miRNA:   3'- cCUUGCUGcaGCGG-------------CCGCUCACCU-GC- -5'
16401 3' -57.1 NC_004084.1 + 3174 0.66 0.67292
Target:  5'- -aGACGuCGUCGaCGGCGA--GGACGu -3'
miRNA:   3'- ccUUGCuGCAGCgGCCGCUcaCCUGC- -5'
16401 3' -57.1 NC_004084.1 + 51710 0.69 0.485867
Target:  5'- cGGACgGACaUCGCCGGCGuugaccucgAGaUGGACGu -3'
miRNA:   3'- cCUUG-CUGcAGCGGCCGC---------UC-ACCUGC- -5'
16401 3' -57.1 NC_004084.1 + 40728 0.7 0.476059
Target:  5'- uGGAuCGugGUCGaCUGGCGGaaGGGCa -3'
miRNA:   3'- -CCUuGCugCAGC-GGCCGCUcaCCUGc -5'
16401 3' -57.1 NC_004084.1 + 41837 0.7 0.46635
Target:  5'- gGGggUGACGagGCCgauGGUGAGUGaguccGACGa -3'
miRNA:   3'- -CCuuGCUGCagCGG---CCGCUCAC-----CUGC- -5'
16401 3' -57.1 NC_004084.1 + 30408 0.67 0.618944
Target:  5'- uGGAGcCGACGUCGacgggCGGCGAcggaagcgauggcGaGGACGa -3'
miRNA:   3'- -CCUU-GCUGCAGCg----GCCGCU-------------CaCCUGC- -5'
16401 3' -57.1 NC_004084.1 + 20856 0.67 0.620003
Target:  5'- aGGGugGcACGUcgaccgCGCCGGCGA-UGGAa- -3'
miRNA:   3'- -CCUugC-UGCA------GCGGCCGCUcACCUgc -5'
16401 3' -57.1 NC_004084.1 + 52582 0.67 0.630602
Target:  5'- aGGAcugcgGCGGCGUgGuCCGGUGGGUcGaGGCa -3'
miRNA:   3'- -CCU-----UGCUGCAgC-GGCCGCUCA-C-CUGc -5'
16401 3' -57.1 NC_004084.1 + 237 0.67 0.651794
Target:  5'- cGAGCGAUGcacgcaGCCGGCGAa-GGGCu -3'
miRNA:   3'- cCUUGCUGCag----CGGCCGCUcaCCUGc -5'
16401 3' -57.1 NC_004084.1 + 47082 0.67 0.656027
Target:  5'- gGGAGCGAUGUcuaaucccgacaaccCGCCGGuCGgcaccugcauccGGUGcGACGc -3'
miRNA:   3'- -CCUUGCUGCA---------------GCGGCC-GC------------UCAC-CUGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.